Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides PGA1_262p02350 and PGA1_262p02360 are separated by 40 nucleotides PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides PGA1_262p02370 and PGA1_262p02380 overlap by 4 nucleotides
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
PGA1_262p02380: PGA1_262p02380 - putative histidine transport system permease protein HisM, at 259,807 to 260,583
_262p02380
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350 at 257.676 kb on - strand, within PGA1_262p02350 at 257.699 kb on + strand, within PGA1_262p02350 at 257.737 kb on + strand, within PGA1_262p02350 at 257.742 kb on + strand, within PGA1_262p02350 at 257.745 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 257.852 kb on - strand, within PGA1_262p02350 at 258.018 kb on + strand, within PGA1_262p02350 at 258.197 kb on + strand at 258.439 kb on + strand, within PGA1_262p02360 at 258.439 kb on + strand, within PGA1_262p02360 at 258.477 kb on - strand, within PGA1_262p02360 at 258.501 kb on + strand, within PGA1_262p02360 at 258.691 kb on + strand, within PGA1_262p02360 at 258.761 kb on - strand, within PGA1_262p02360 at 258.795 kb on + strand, within PGA1_262p02360 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.282 kb on - strand, within PGA1_262p02370 at 259.329 kb on + strand, within PGA1_262p02370 at 259.524 kb on - strand, within PGA1_262p02370 at 259.533 kb on + strand, within PGA1_262p02370 at 259.568 kb on - strand, within PGA1_262p02370 at 259.809 kb on - strand at 259.916 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.986 kb on - strand, within PGA1_262p02380 at 260.030 kb on + strand, within PGA1_262p02380
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 257,287 + -0.3 257,295 - +1.2 257,300 + +1.2 257,445 - +0.2 257,532 + PGA1_262p02350 0.18 +1.1 257,532 + PGA1_262p02350 0.18 +1.8 257,532 + PGA1_262p02350 0.18 +0.8 257,540 + PGA1_262p02350 0.19 -0.4 257,540 + PGA1_262p02350 0.19 +0.1 257,570 - PGA1_262p02350 0.22 -0.1 257,619 - PGA1_262p02350 0.28 -1.4 257,676 - PGA1_262p02350 0.35 +0.3 257,699 + PGA1_262p02350 0.37 +1.1 257,737 + PGA1_262p02350 0.42 -0.2 257,742 + PGA1_262p02350 0.42 -0.3 257,745 - PGA1_262p02350 0.43 -0.9 257,852 - PGA1_262p02350 0.55 +1.2 257,852 - PGA1_262p02350 0.55 +1.4 258,018 + PGA1_262p02350 0.75 -0.3 258,197 + +0.1 258,439 + PGA1_262p02360 0.22 +0.1 258,439 + PGA1_262p02360 0.22 -0.4 258,477 - PGA1_262p02360 0.27 +0.4 258,501 + PGA1_262p02360 0.30 -0.9 258,691 + PGA1_262p02360 0.54 -0.8 258,761 - PGA1_262p02360 0.63 -0.7 258,795 + PGA1_262p02360 0.67 -1.5 258,876 - PGA1_262p02360 0.78 +0.9 258,877 - PGA1_262p02360 0.78 -0.1 258,931 - PGA1_262p02360 0.85 -1.8 259,041 - +0.1 259,046 - +0.5 259,095 - +0.5 259,274 + PGA1_262p02370 0.29 -0.8 259,274 + PGA1_262p02370 0.29 -0.2 259,274 + PGA1_262p02370 0.29 +0.2 259,282 - PGA1_262p02370 0.30 -1.8 259,329 + PGA1_262p02370 0.36 -0.6 259,524 - PGA1_262p02370 0.62 +0.6 259,533 + PGA1_262p02370 0.63 -2.3 259,568 - PGA1_262p02370 0.68 +1.0 259,809 - +0.0 259,916 + PGA1_262p02380 0.14 +2.2 259,985 + PGA1_262p02380 0.23 +0.5 259,985 + PGA1_262p02380 0.23 +0.1 259,986 - PGA1_262p02380 0.23 -0.7 260,030 + PGA1_262p02380 0.29 +2.1
Or see this region's nucleotide sequence