Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02060 and PGA1_262p02070 are separated by 235 nucleotides PGA1_262p02070 and PGA1_262p02080 are separated by 236 nucleotides PGA1_262p02080 and PGA1_262p02090 overlap by 4 nucleotides
PGA1_262p02060: PGA1_262p02060 - transposase, at 223,853 to 225,382
_262p02060
PGA1_262p02070: PGA1_262p02070 - hypothetical protein, at 225,618 to 225,896
_262p02070
PGA1_262p02080: PGA1_262p02080 - hypothetical protein, at 226,133 to 226,477
_262p02080
PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860
_262p02090
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 225.580 kb on + strand at 225.582 kb on - strand at 225.585 kb on + strand at 225.611 kb on + strand at 225.612 kb on + strand at 225.764 kb on - strand, within PGA1_262p02070 at 225.765 kb on - strand, within PGA1_262p02070 at 226.107 kb on - strand at 226.107 kb on - strand at 226.117 kb on - strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.144 kb on - strand at 226.159 kb on + strand at 226.210 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.288 kb on - strand, within PGA1_262p02080 at 226.294 kb on + strand, within PGA1_262p02080 at 226.302 kb on - strand, within PGA1_262p02080 at 226.328 kb on + strand, within PGA1_262p02080 at 226.400 kb on + strand, within PGA1_262p02080 at 226.418 kb on - strand, within PGA1_262p02080 at 226.422 kb on + strand, within PGA1_262p02080 at 226.522 kb on + strand, within PGA1_262p02090 at 226.606 kb on + strand, within PGA1_262p02090 at 226.629 kb on + strand, within PGA1_262p02090 at 226.665 kb on - strand, within PGA1_262p02090 at 226.689 kb on - strand, within PGA1_262p02090 at 226.779 kb on + strand, within PGA1_262p02090 at 226.787 kb on - strand, within PGA1_262p02090 at 226.824 kb on - strand at 226.896 kb on + strand at 226.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 225,580 + +0.8 225,582 - -2.0 225,585 + +0.2 225,611 + +0.3 225,612 + -1.3 225,764 - PGA1_262p02070 0.52 -3.5 225,765 - PGA1_262p02070 0.53 +0.3 226,107 - -1.0 226,107 - -0.2 226,117 - -1.2 226,136 + -0.8 226,136 + -1.2 226,136 + -1.4 226,136 + +0.3 226,144 - -2.3 226,159 + +0.7 226,210 - PGA1_262p02080 0.22 -1.6 226,283 - PGA1_262p02080 0.43 +0.3 226,283 - PGA1_262p02080 0.43 +0.8 226,288 - PGA1_262p02080 0.45 -0.9 226,294 + PGA1_262p02080 0.47 +1.7 226,302 - PGA1_262p02080 0.49 -0.8 226,328 + PGA1_262p02080 0.57 -1.5 226,400 + PGA1_262p02080 0.77 +0.2 226,418 - PGA1_262p02080 0.83 -0.3 226,422 + PGA1_262p02080 0.84 +0.4 226,522 + PGA1_262p02090 0.12 +0.7 226,606 + PGA1_262p02090 0.34 +1.2 226,629 + PGA1_262p02090 0.40 +0.4 226,665 - PGA1_262p02090 0.49 -0.6 226,689 - PGA1_262p02090 0.56 -1.4 226,779 + PGA1_262p02090 0.79 +0.5 226,787 - PGA1_262p02090 0.81 -1.7 226,824 - -2.4 226,896 + -1.8 226,896 + -2.3
Or see this region's nucleotide sequence