Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02030 and PGA1_262p02040 are separated by 288 nucleotides PGA1_262p02040 and PGA1_262p02050 are separated by 229 nucleotides
PGA1_262p02030: PGA1_262p02030 - putative insertion sequence ATP binding protein, at 221,679 to 222,410
_262p02030
PGA1_262p02040: PGA1_262p02040 - putative transcriptional regulator, MerR family, at 222,699 to 222,842
_262p02040
PGA1_262p02050: PGA1_262p02050 - transposase, at 223,072 to 223,833
_262p02050
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 222.504 kb on + strand at 222.556 kb on - strand at 222.556 kb on - strand at 222.556 kb on - strand at 222.570 kb on + strand at 222.627 kb on + strand at 222.664 kb on - strand at 222.696 kb on + strand at 222.699 kb on - strand at 222.752 kb on + strand, within PGA1_262p02040 at 222.752 kb on + strand, within PGA1_262p02040 at 222.752 kb on + strand, within PGA1_262p02040 at 222.758 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.784 kb on + strand, within PGA1_262p02040 at 222.784 kb on + strand, within PGA1_262p02040 at 222.792 kb on + strand, within PGA1_262p02040 at 222.792 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.812 kb on - strand, within PGA1_262p02040 at 222.846 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.862 kb on + strand at 222.862 kb on + strand at 222.865 kb on - strand at 222.865 kb on - strand at 222.870 kb on - strand at 222.870 kb on - strand at 222.920 kb on - strand at 222.994 kb on - strand at 223.002 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 222,504 + +0.1 222,556 - +0.4 222,556 - +0.7 222,556 - +1.3 222,570 + -0.1 222,627 + +0.3 222,664 - -1.3 222,696 + -1.5 222,699 - +0.2 222,752 + PGA1_262p02040 0.37 -0.4 222,752 + PGA1_262p02040 0.37 +0.3 222,752 + PGA1_262p02040 0.37 +0.2 222,758 - PGA1_262p02040 0.41 -0.9 222,760 - PGA1_262p02040 0.42 -0.5 222,760 - PGA1_262p02040 0.42 +0.7 222,760 - PGA1_262p02040 0.42 -1.2 222,784 + PGA1_262p02040 0.59 -0.9 222,784 + PGA1_262p02040 0.59 -0.7 222,792 + PGA1_262p02040 0.65 -1.3 222,792 - PGA1_262p02040 0.65 -1.5 222,800 - PGA1_262p02040 0.70 -2.6 222,800 - PGA1_262p02040 0.70 +0.5 222,800 - PGA1_262p02040 0.70 -0.7 222,812 - PGA1_262p02040 0.78 +1.4 222,846 + +1.7 222,857 + -0.9 222,857 + +1.1 222,857 + -0.3 222,857 + +0.1 222,862 + +0.5 222,862 + -1.3 222,865 - -0.5 222,865 - -0.1 222,870 - -0.9 222,870 - +1.7 222,920 - -1.3 222,994 - -2.5 223,002 - -0.9 223,014 - +0.1 223,014 - -0.2 223,014 - +0.7 223,014 - -0.1 223,023 - +1.2
Or see this region's nucleotide sequence