Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01990 and PGA1_262p02000 are separated by 85 nucleotides PGA1_262p02000 and PGA1_262p02010 are separated by 269 nucleotides PGA1_262p02010 and PGA1_262p02020 are separated by 309 nucleotides
PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607
_262p01990
PGA1_262p02000: PGA1_262p02000 - putative transcriptional regulator, LysR type, at 218,693 to 219,550
_262p02000
PGA1_262p02010: PGA1_262p02010 - Uncharacterized conserved protein, at 219,820 to 220,068
_262p02010
PGA1_262p02020: PGA1_262p02020 - putative integrase, at 220,378 to 221,682
_262p02020
Position (kb) 218
219
220 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 217.775 kb on - strand, within PGA1_262p01990 at 217.793 kb on - strand, within PGA1_262p01990 at 217.796 kb on - strand, within PGA1_262p01990 at 217.809 kb on - strand, within PGA1_262p01990 at 217.809 kb on - strand, within PGA1_262p01990 at 217.846 kb on + strand, within PGA1_262p01990 at 217.854 kb on - strand, within PGA1_262p01990 at 217.854 kb on - strand, within PGA1_262p01990 at 217.883 kb on + strand, within PGA1_262p01990 at 217.883 kb on + strand, within PGA1_262p01990 at 217.934 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 217.944 kb on - strand, within PGA1_262p01990 at 218.144 kb on - strand, within PGA1_262p01990 at 218.426 kb on + strand, within PGA1_262p01990 at 218.505 kb on + strand at 218.513 kb on - strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.538 kb on + strand at 218.539 kb on + strand at 218.540 kb on + strand at 218.540 kb on + strand at 218.546 kb on - strand at 218.546 kb on - strand at 218.603 kb on + strand at 218.709 kb on - strand at 218.716 kb on + strand at 218.724 kb on - strand at 218.763 kb on + strand at 218.860 kb on - strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.916 kb on - strand, within PGA1_262p02000 at 218.928 kb on + strand, within PGA1_262p02000 at 218.929 kb on - strand, within PGA1_262p02000 at 218.951 kb on - strand, within PGA1_262p02000 at 219.070 kb on - strand, within PGA1_262p02000 at 219.074 kb on + strand, within PGA1_262p02000 at 219.118 kb on + strand, within PGA1_262p02000 at 219.402 kb on + strand, within PGA1_262p02000 at 219.416 kb on + strand, within PGA1_262p02000 at 219.480 kb on + strand at 219.480 kb on + strand at 219.480 kb on + strand at 219.488 kb on - strand at 219.488 kb on - strand at 219.585 kb on - strand at 219.585 kb on - strand at 219.595 kb on + strand at 219.626 kb on + strand at 219.632 kb on - strand at 219.640 kb on + strand at 219.667 kb on + strand at 219.667 kb on + strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.698 kb on - strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.782 kb on + strand at 219.788 kb on - strand at 219.788 kb on - strand at 219.810 kb on + strand at 219.845 kb on - strand, within PGA1_262p02010 at 219.896 kb on - strand, within PGA1_262p02010 at 219.961 kb on - strand, within PGA1_262p02010 at 220.010 kb on + strand, within PGA1_262p02010
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 217,775 - PGA1_262p01990 0.19 +0.1 217,793 - PGA1_262p01990 0.20 -2.9 217,796 - PGA1_262p01990 0.21 -0.8 217,809 - PGA1_262p01990 0.22 -1.5 217,809 - PGA1_262p01990 0.22 -1.5 217,846 + PGA1_262p01990 0.26 -1.2 217,854 - PGA1_262p01990 0.26 -1.9 217,854 - PGA1_262p01990 0.26 +0.9 217,883 + PGA1_262p01990 0.29 +0.7 217,883 + PGA1_262p01990 0.29 -2.9 217,934 - PGA1_262p01990 0.34 -1.5 217,944 - PGA1_262p01990 0.35 -0.3 217,944 - PGA1_262p01990 0.35 +2.1 217,944 - PGA1_262p01990 0.35 -3.8 218,144 - PGA1_262p01990 0.55 +0.2 218,426 + PGA1_262p01990 0.82 +0.2 218,505 + -1.4 218,513 - +1.8 218,538 + +2.2 218,538 + +1.5 218,538 + -0.3 218,538 + -0.0 218,539 + -1.0 218,540 + +0.1 218,540 + +0.2 218,546 - -1.2 218,546 - -1.3 218,603 + -1.0 218,709 - -0.2 218,716 + -0.8 218,724 - +0.5 218,763 + -0.9 218,860 - PGA1_262p02000 0.19 -0.9 218,908 + PGA1_262p02000 0.25 -0.9 218,908 + PGA1_262p02000 0.25 -2.3 218,916 - PGA1_262p02000 0.26 -0.1 218,928 + PGA1_262p02000 0.27 +0.7 218,929 - PGA1_262p02000 0.28 -2.5 218,951 - PGA1_262p02000 0.30 +0.4 219,070 - PGA1_262p02000 0.44 -0.7 219,074 + PGA1_262p02000 0.44 -0.7 219,118 + PGA1_262p02000 0.50 +0.2 219,402 + PGA1_262p02000 0.83 -0.9 219,416 + PGA1_262p02000 0.84 +0.8 219,480 + +0.4 219,480 + +1.2 219,480 + +0.5 219,488 - +0.2 219,488 - -1.7 219,585 - -0.3 219,585 - -1.0 219,595 + +1.4 219,626 + -0.9 219,632 - -1.2 219,640 + +0.2 219,667 + -0.1 219,667 + +1.2 219,675 - +0.7 219,675 - -1.0 219,675 - -1.5 219,698 - -0.3 219,780 + +0.0 219,780 + +0.3 219,780 + -0.7 219,780 + +0.2 219,782 + +0.3 219,788 - -0.2 219,788 - +0.5 219,810 + +1.4 219,845 - PGA1_262p02010 0.10 -0.7 219,896 - PGA1_262p02010 0.31 -0.7 219,961 - PGA1_262p02010 0.57 -0.3 220,010 + PGA1_262p02010 0.76 -0.3
Or see this region's nucleotide sequence