Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01990

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01970 and PGA1_262p01980 are separated by 43 nucleotidesPGA1_262p01980 and PGA1_262p01990 are separated by 97 nucleotidesPGA1_262p01990 and PGA1_262p02000 are separated by 85 nucleotides PGA1_262p01970: PGA1_262p01970 - putative transcriptional regulator, TetR family, at 216,044 to 216,652 _262p01970 PGA1_262p01980: PGA1_262p01980 - putative enoyl-CoA hydratase, at 216,696 to 217,487 _262p01980 PGA1_262p01990: PGA1_262p01990 - Predicted permeases, at 217,585 to 218,607 _262p01990 PGA1_262p02000: PGA1_262p02000 - putative transcriptional regulator, LysR type, at 218,693 to 219,550 _262p02000 Position (kb) 217 218 219Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 216.616 kb on + strandat 216.636 kb on - strandat 216.660 kb on + strandat 216.739 kb on + strandat 216.739 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.744 kb on + strandat 216.747 kb on - strandat 216.752 kb on - strandat 216.752 kb on - strandat 216.764 kb on + strandat 216.772 kb on + strandat 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.784 kb on - strand, within PGA1_262p01980at 216.862 kb on - strand, within PGA1_262p01980at 216.864 kb on + strand, within PGA1_262p01980at 216.875 kb on + strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.922 kb on - strand, within PGA1_262p01980at 216.965 kb on + strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 216.973 kb on - strand, within PGA1_262p01980at 217.011 kb on + strand, within PGA1_262p01980at 217.049 kb on + strand, within PGA1_262p01980at 217.114 kb on - strand, within PGA1_262p01980at 217.268 kb on + strand, within PGA1_262p01980at 217.273 kb on - strand, within PGA1_262p01980at 217.279 kb on + strand, within PGA1_262p01980at 217.346 kb on + strand, within PGA1_262p01980at 217.353 kb on + strand, within PGA1_262p01980at 217.355 kb on + strand, within PGA1_262p01980at 217.363 kb on - strand, within PGA1_262p01980at 217.400 kb on - strand, within PGA1_262p01980at 217.409 kb on + strandat 217.445 kb on - strandat 217.446 kb on - strandat 217.582 kb on + strandat 217.582 kb on + strandat 217.624 kb on + strandat 217.632 kb on - strandat 217.775 kb on - strand, within PGA1_262p01990at 217.793 kb on - strand, within PGA1_262p01990at 217.796 kb on - strand, within PGA1_262p01990at 217.809 kb on - strand, within PGA1_262p01990at 217.809 kb on - strand, within PGA1_262p01990at 217.846 kb on + strand, within PGA1_262p01990at 217.854 kb on - strand, within PGA1_262p01990at 217.854 kb on - strand, within PGA1_262p01990at 217.883 kb on + strand, within PGA1_262p01990at 217.883 kb on + strand, within PGA1_262p01990at 217.934 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 217.944 kb on - strand, within PGA1_262p01990at 218.144 kb on - strand, within PGA1_262p01990at 218.426 kb on + strand, within PGA1_262p01990at 218.505 kb on + strandat 218.513 kb on - strandat 218.538 kb on + strandat 218.538 kb on + strandat 218.538 kb on + strandat 218.538 kb on + strandat 218.539 kb on + strandat 218.540 kb on + strandat 218.540 kb on + strandat 218.546 kb on - strandat 218.546 kb on - strandat 218.603 kb on + strandat 218.709 kb on - strandat 218.716 kb on + strandat 218.724 kb on - strandat 218.763 kb on + strandat 218.860 kb on - strand, within PGA1_262p02000at 218.908 kb on + strand, within PGA1_262p02000at 218.908 kb on + strand, within PGA1_262p02000at 218.916 kb on - strand, within PGA1_262p02000at 218.928 kb on + strand, within PGA1_262p02000at 218.929 kb on - strand, within PGA1_262p02000at 218.951 kb on - strand, within PGA1_262p02000at 219.070 kb on - strand, within PGA1_262p02000at 219.074 kb on + strand, within PGA1_262p02000at 219.118 kb on + strand, within PGA1_262p02000at 219.402 kb on + strand, within PGA1_262p02000at 219.416 kb on + strand, within PGA1_262p02000at 219.480 kb on + strandat 219.480 kb on + strandat 219.480 kb on + strandat 219.488 kb on - strandat 219.488 kb on - strandat 219.585 kb on - strandat 219.585 kb on - strandat 219.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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216,616 + +0.2
216,636 - -1.0
216,660 + -1.8
216,739 + +0.2
216,739 + -0.5
216,744 + -0.0
216,744 + +0.7
216,744 + +1.7
216,747 - -0.6
216,752 - +0.4
216,752 - -0.9
216,764 + -1.7
216,772 + -0.7
216,784 - PGA1_262p01980 0.11 +1.1
216,784 - PGA1_262p01980 0.11 -0.0
216,784 - PGA1_262p01980 0.11 +0.7
216,862 - PGA1_262p01980 0.21 -0.0
216,864 + PGA1_262p01980 0.21 +1.5
216,875 + PGA1_262p01980 0.23 -0.7
216,922 - PGA1_262p01980 0.29 -0.3
216,922 - PGA1_262p01980 0.29 -0.1
216,965 + PGA1_262p01980 0.34 -0.2
216,973 - PGA1_262p01980 0.35 -1.6
216,973 - PGA1_262p01980 0.35 -1.8
217,011 + PGA1_262p01980 0.40 -0.6
217,049 + PGA1_262p01980 0.45 +0.3
217,114 - PGA1_262p01980 0.53 -2.2
217,268 + PGA1_262p01980 0.72 +0.7
217,273 - PGA1_262p01980 0.73 -0.3
217,279 + PGA1_262p01980 0.74 +1.1
217,346 + PGA1_262p01980 0.82 +1.2
217,353 + PGA1_262p01980 0.83 -1.3
217,355 + PGA1_262p01980 0.83 +0.5
217,363 - PGA1_262p01980 0.84 +0.7
217,400 - PGA1_262p01980 0.89 +0.7
217,409 + -0.3
217,445 - +1.1
217,446 - -1.3
217,582 + -1.9
217,582 + -0.6
217,624 + +0.5
217,632 - -3.0
217,775 - PGA1_262p01990 0.19 +0.1
217,793 - PGA1_262p01990 0.20 -2.9
217,796 - PGA1_262p01990 0.21 -0.8
217,809 - PGA1_262p01990 0.22 -1.5
217,809 - PGA1_262p01990 0.22 -1.5
217,846 + PGA1_262p01990 0.26 -1.2
217,854 - PGA1_262p01990 0.26 -1.9
217,854 - PGA1_262p01990 0.26 +0.9
217,883 + PGA1_262p01990 0.29 +0.7
217,883 + PGA1_262p01990 0.29 -2.9
217,934 - PGA1_262p01990 0.34 -1.5
217,944 - PGA1_262p01990 0.35 -0.3
217,944 - PGA1_262p01990 0.35 +2.1
217,944 - PGA1_262p01990 0.35 -3.8
218,144 - PGA1_262p01990 0.55 +0.2
218,426 + PGA1_262p01990 0.82 +0.2
218,505 + -1.4
218,513 - +1.8
218,538 + +2.2
218,538 + +1.5
218,538 + -0.3
218,538 + -0.0
218,539 + -1.0
218,540 + +0.1
218,540 + +0.2
218,546 - -1.2
218,546 - -1.3
218,603 + -1.0
218,709 - -0.2
218,716 + -0.8
218,724 - +0.5
218,763 + -0.9
218,860 - PGA1_262p02000 0.19 -0.9
218,908 + PGA1_262p02000 0.25 -0.9
218,908 + PGA1_262p02000 0.25 -2.3
218,916 - PGA1_262p02000 0.26 -0.1
218,928 + PGA1_262p02000 0.27 +0.7
218,929 - PGA1_262p02000 0.28 -2.5
218,951 - PGA1_262p02000 0.30 +0.4
219,070 - PGA1_262p02000 0.44 -0.7
219,074 + PGA1_262p02000 0.44 -0.7
219,118 + PGA1_262p02000 0.50 +0.2
219,402 + PGA1_262p02000 0.83 -0.9
219,416 + PGA1_262p02000 0.84 +0.8
219,480 + +0.4
219,480 + +1.2
219,480 + +0.5
219,488 - +0.2
219,488 - -1.7
219,585 - -0.3
219,585 - -1.0
219,595 + +1.4

Or see this region's nucleotide sequence