Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01850

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01840 and PGA1_262p01850 are separated by 79 nucleotidesPGA1_262p01850 and PGA1_262p01860 are separated by 55 nucleotides PGA1_262p01840: PGA1_262p01840 - ATP-dependent AMP binding enzyme, at 202,560 to 204,191 _262p01840 PGA1_262p01850: PGA1_262p01850 - putative enoyl-CoA hydratase, at 204,271 to 205,077 _262p01850 PGA1_262p01860: PGA1_262p01860 - putative acyl-Co-A dehydrogenase, at 205,133 to 206,911 _262p01860 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.283 kb on - strand, within PGA1_262p01840at 203.478 kb on + strand, within PGA1_262p01840at 203.570 kb on + strand, within PGA1_262p01840at 203.599 kb on + strand, within PGA1_262p01840at 203.599 kb on + strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.631 kb on + strand, within PGA1_262p01840at 203.727 kb on + strand, within PGA1_262p01840at 203.730 kb on + strand, within PGA1_262p01840at 203.959 kb on - strand, within PGA1_262p01840at 203.991 kb on - strand, within PGA1_262p01840at 204.086 kb on - strandat 204.091 kb on - strandat 204.117 kb on + strandat 204.133 kb on + strandat 204.143 kb on + strandat 204.143 kb on + strandat 204.151 kb on - strandat 204.225 kb on + strandat 204.277 kb on + strandat 204.321 kb on - strandat 204.333 kb on - strandat 204.456 kb on + strand, within PGA1_262p01850at 204.459 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.521 kb on + strand, within PGA1_262p01850at 204.627 kb on - strand, within PGA1_262p01850at 204.778 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.811 kb on - strand, within PGA1_262p01850at 204.822 kb on + strand, within PGA1_262p01850at 204.827 kb on + strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.839 kb on + strand, within PGA1_262p01850at 204.845 kb on - strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.959 kb on - strand, within PGA1_262p01850at 205.029 kb on + strandat 205.029 kb on + strandat 205.029 kb on + strandat 205.042 kb on + strandat 205.046 kb on + strandat 205.053 kb on + strandat 205.054 kb on - strandat 205.096 kb on + strandat 205.145 kb on - strandat 205.162 kb on + strandat 205.170 kb on - strandat 205.209 kb on + strandat 205.211 kb on + strandat 205.219 kb on - strandat 205.219 kb on - strandat 205.288 kb on + strandat 205.300 kb on + strandat 205.385 kb on - strand, within PGA1_262p01860at 205.406 kb on - strand, within PGA1_262p01860at 205.420 kb on - strand, within PGA1_262p01860at 205.431 kb on - strand, within PGA1_262p01860at 205.434 kb on + strand, within PGA1_262p01860at 205.434 kb on + strand, within PGA1_262p01860at 205.565 kb on + strand, within PGA1_262p01860at 205.573 kb on - strand, within PGA1_262p01860at 205.634 kb on + strand, within PGA1_262p01860at 205.634 kb on + strand, within PGA1_262p01860at 205.679 kb on + strand, within PGA1_262p01860at 205.734 kb on + strand, within PGA1_262p01860at 205.736 kb on - strand, within PGA1_262p01860at 205.769 kb on - strand, within PGA1_262p01860at 205.769 kb on - strand, within PGA1_262p01860at 205.782 kb on + strand, within PGA1_262p01860at 205.792 kb on + strand, within PGA1_262p01860at 205.800 kb on - strand, within PGA1_262p01860at 205.800 kb on - strand, within PGA1_262p01860at 205.822 kb on + strand, within PGA1_262p01860at 205.833 kb on + strand, within PGA1_262p01860at 205.913 kb on + strand, within PGA1_262p01860at 205.931 kb on + strand, within PGA1_262p01860at 206.001 kb on - strand, within PGA1_262p01860at 206.001 kb on - strand, within PGA1_262p01860

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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203,283 - PGA1_262p01840 0.44 +1.5
203,478 + PGA1_262p01840 0.56 +0.9
203,570 + PGA1_262p01840 0.62 -1.7
203,599 + PGA1_262p01840 0.64 -2.3
203,599 + PGA1_262p01840 0.64 +1.8
203,607 - PGA1_262p01840 0.64 +1.1
203,607 - PGA1_262p01840 0.64 -2.2
203,607 - PGA1_262p01840 0.64 +1.2
203,607 - PGA1_262p01840 0.64 -1.2
203,607 - PGA1_262p01840 0.64 -0.2
203,631 + PGA1_262p01840 0.66 -0.1
203,727 + PGA1_262p01840 0.72 -1.4
203,730 + PGA1_262p01840 0.72 -0.8
203,959 - PGA1_262p01840 0.86 +0.9
203,991 - PGA1_262p01840 0.88 -0.2
204,086 - -0.3
204,091 - -0.9
204,117 + -0.3
204,133 + +1.0
204,143 + +0.5
204,143 + +1.0
204,151 - +1.1
204,225 + -0.9
204,277 + +0.9
204,321 - -0.6
204,333 - -0.1
204,456 + PGA1_262p01850 0.23 -0.7
204,459 - PGA1_262p01850 0.23 +0.1
204,464 - PGA1_262p01850 0.24 -0.3
204,464 - PGA1_262p01850 0.24 +0.5
204,521 + PGA1_262p01850 0.31 -0.7
204,627 - PGA1_262p01850 0.44 -1.1
204,778 - PGA1_262p01850 0.63 -0.9
204,797 - PGA1_262p01850 0.65 -1.2
204,797 - PGA1_262p01850 0.65 -0.5
204,797 - PGA1_262p01850 0.65 +1.7
204,797 - PGA1_262p01850 0.65 -0.2
204,797 - PGA1_262p01850 0.65 -0.9
204,811 - PGA1_262p01850 0.67 +0.2
204,822 + PGA1_262p01850 0.68 -1.2
204,827 + PGA1_262p01850 0.69 +0.0
204,830 - PGA1_262p01850 0.69 +0.5
204,830 - PGA1_262p01850 0.69 -0.7
204,830 - PGA1_262p01850 0.69 -1.3
204,839 + PGA1_262p01850 0.70 +0.3
204,845 - PGA1_262p01850 0.71 +0.5
204,858 + PGA1_262p01850 0.73 +0.1
204,858 + PGA1_262p01850 0.73 +0.7
204,858 + PGA1_262p01850 0.73 +0.0
204,858 + PGA1_262p01850 0.73 +0.7
204,858 + PGA1_262p01850 0.73 -0.7
204,858 + PGA1_262p01850 0.73 +0.2
204,866 - PGA1_262p01850 0.74 -1.2
204,866 - PGA1_262p01850 0.74 +0.1
204,866 - PGA1_262p01850 0.74 +0.2
204,914 + PGA1_262p01850 0.80 +2.4
204,914 + PGA1_262p01850 0.80 -1.2
204,914 + PGA1_262p01850 0.80 -0.3
204,914 + PGA1_262p01850 0.80 +0.7
204,914 + PGA1_262p01850 0.80 +0.6
204,914 + PGA1_262p01850 0.80 -2.4
204,914 + PGA1_262p01850 0.80 -1.8
204,922 - PGA1_262p01850 0.81 +3.0
204,922 - PGA1_262p01850 0.81 -0.3
204,929 + PGA1_262p01850 0.82 +0.1
204,929 + PGA1_262p01850 0.82 +0.2
204,929 + PGA1_262p01850 0.82 +0.9
204,929 + PGA1_262p01850 0.82 +0.3
204,937 - PGA1_262p01850 0.83 -1.2
204,937 - PGA1_262p01850 0.83 +0.5
204,959 - PGA1_262p01850 0.85 -0.3
205,029 + -0.3
205,029 + -0.5
205,029 + -0.1
205,042 + -0.5
205,046 + -0.5
205,053 + +0.3
205,054 - -1.3
205,096 + +2.2
205,145 - +0.7
205,162 + -0.7
205,170 - +1.0
205,209 + +0.2
205,211 + -0.1
205,219 - -0.9
205,219 - -0.4
205,288 + +1.9
205,300 + -0.2
205,385 - PGA1_262p01860 0.14 -0.5
205,406 - PGA1_262p01860 0.15 +0.7
205,420 - PGA1_262p01860 0.16 -2.0
205,431 - PGA1_262p01860 0.17 +0.4
205,434 + PGA1_262p01860 0.17 +0.1
205,434 + PGA1_262p01860 0.17 -0.7
205,565 + PGA1_262p01860 0.24 -0.0
205,573 - PGA1_262p01860 0.25 -0.7
205,634 + PGA1_262p01860 0.28 +1.9
205,634 + PGA1_262p01860 0.28 +0.8
205,679 + PGA1_262p01860 0.31 +1.7
205,734 + PGA1_262p01860 0.34 +0.2
205,736 - PGA1_262p01860 0.34 -0.9
205,769 - PGA1_262p01860 0.36 +0.3
205,769 - PGA1_262p01860 0.36 -2.9
205,782 + PGA1_262p01860 0.36 -2.3
205,792 + PGA1_262p01860 0.37 +0.1
205,800 - PGA1_262p01860 0.37 -0.2
205,800 - PGA1_262p01860 0.37 -0.3
205,822 + PGA1_262p01860 0.39 -0.7
205,833 + PGA1_262p01860 0.39 +0.7
205,913 + PGA1_262p01860 0.44 -1.5
205,931 + PGA1_262p01860 0.45 +1.7
206,001 - PGA1_262p01860 0.49 +0.1
206,001 - PGA1_262p01860 0.49 -0.3

Or see this region's nucleotide sequence