Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotides PGA1_262p01740 and PGA1_262p01750 are separated by 11 nucleotides PGA1_262p01750 and PGA1_262p01760 are separated by 26 nucleotides
PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808
_262p01730
PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734
_262p01740
PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389
_262p01750
PGA1_262p01760: PGA1_262p01760 - epoxide hydrolase, similar to eukaryotic, at 193,416 to 194,588
_262p01760
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 190.781 kb on + strand at 190.809 kb on + strand at 190.849 kb on - strand at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.912 kb on - strand, within PGA1_262p01740 at 190.968 kb on - strand, within PGA1_262p01740 at 191.139 kb on + strand, within PGA1_262p01740 at 191.231 kb on - strand, within PGA1_262p01740 at 191.261 kb on - strand, within PGA1_262p01740 at 191.266 kb on - strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.327 kb on - strand, within PGA1_262p01740 at 191.375 kb on + strand, within PGA1_262p01740 at 191.410 kb on + strand, within PGA1_262p01740 at 191.418 kb on - strand, within PGA1_262p01740 at 191.457 kb on - strand, within PGA1_262p01740 at 191.520 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.609 kb on - strand, within PGA1_262p01740 at 191.671 kb on + strand at 191.744 kb on - strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.818 kb on + strand at 191.826 kb on - strand at 191.826 kb on - strand at 191.866 kb on - strand at 191.881 kb on + strand at 192.051 kb on - strand, within PGA1_262p01750 at 192.155 kb on - strand, within PGA1_262p01750 at 192.178 kb on - strand, within PGA1_262p01750 at 192.196 kb on + strand, within PGA1_262p01750 at 192.223 kb on + strand, within PGA1_262p01750 at 192.274 kb on + strand, within PGA1_262p01750 at 192.388 kb on + strand, within PGA1_262p01750 at 192.396 kb on - strand, within PGA1_262p01750 at 192.412 kb on + strand, within PGA1_262p01750 at 192.446 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.560 kb on + strand, within PGA1_262p01750 at 192.629 kb on + strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.637 kb on - strand, within PGA1_262p01750 at 192.668 kb on + strand, within PGA1_262p01750 at 192.876 kb on - strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.878 kb on + strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.886 kb on - strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.917 kb on + strand, within PGA1_262p01750 at 192.991 kb on + strand, within PGA1_262p01750 at 193.202 kb on - strand, within PGA1_262p01750 at 193.305 kb on - strand at 193.351 kb on - strand at 193.620 kb on - strand, within PGA1_262p01760 at 193.677 kb on - strand, within PGA1_262p01760 at 193.772 kb on + strand, within PGA1_262p01760 at 193.779 kb on + strand, within PGA1_262p01760 at 193.792 kb on - strand, within PGA1_262p01760 at 193.799 kb on + strand, within PGA1_262p01760 at 193.882 kb on + strand, within PGA1_262p01760 at 193.928 kb on - strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.973 kb on + strand, within PGA1_262p01760 at 193.987 kb on + strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.164 kb on + strand, within PGA1_262p01760 at 194.172 kb on - strand, within PGA1_262p01760 at 194.302 kb on + strand, within PGA1_262p01760 at 194.321 kb on + strand, within PGA1_262p01760
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 190,781 + -1.1 190,809 + +1.0 190,849 - +0.2 190,900 - PGA1_262p01740 0.10 +1.0 190,900 - PGA1_262p01740 0.10 -0.6 190,900 - PGA1_262p01740 0.10 -0.8 190,912 - PGA1_262p01740 0.12 +0.1 190,968 - PGA1_262p01740 0.18 -0.5 191,139 + PGA1_262p01740 0.36 -1.7 191,231 - PGA1_262p01740 0.46 -0.8 191,261 - PGA1_262p01740 0.49 +0.6 191,266 - PGA1_262p01740 0.50 -0.9 191,323 + PGA1_262p01740 0.56 +0.1 191,323 + PGA1_262p01740 0.56 -0.2 191,327 - PGA1_262p01740 0.56 -0.6 191,375 + PGA1_262p01740 0.61 -0.0 191,410 + PGA1_262p01740 0.65 -0.8 191,418 - PGA1_262p01740 0.66 +0.9 191,457 - PGA1_262p01740 0.70 +2.3 191,520 + PGA1_262p01740 0.77 -1.3 191,601 + PGA1_262p01740 0.86 -3.9 191,601 + PGA1_262p01740 0.86 +0.6 191,601 + PGA1_262p01740 0.86 -0.3 191,609 - PGA1_262p01740 0.86 +0.8 191,671 + +1.5 191,744 - -0.5 191,818 + -0.3 191,818 + -1.5 191,818 + -0.9 191,818 + -0.7 191,818 + -0.7 191,818 + -1.1 191,826 - +0.4 191,826 - -0.9 191,866 - +0.1 191,881 + -0.7 192,051 - PGA1_262p01750 0.19 -2.5 192,155 - PGA1_262p01750 0.25 +0.7 192,178 - PGA1_262p01750 0.26 +0.9 192,196 + PGA1_262p01750 0.27 +0.3 192,223 + PGA1_262p01750 0.29 +1.8 192,274 + PGA1_262p01750 0.32 -0.6 192,388 + PGA1_262p01750 0.39 +1.2 192,396 - PGA1_262p01750 0.40 +1.1 192,412 + PGA1_262p01750 0.41 -1.8 192,446 + PGA1_262p01750 0.43 +0.7 192,560 + PGA1_262p01750 0.50 +0.7 192,560 + PGA1_262p01750 0.50 +0.4 192,629 + PGA1_262p01750 0.54 +0.1 192,637 - PGA1_262p01750 0.54 -2.0 192,637 - PGA1_262p01750 0.54 +0.1 192,668 + PGA1_262p01750 0.56 -1.8 192,876 - PGA1_262p01750 0.69 -1.4 192,878 + PGA1_262p01750 0.69 +1.0 192,878 + PGA1_262p01750 0.69 +1.2 192,878 + PGA1_262p01750 0.69 +1.2 192,886 - PGA1_262p01750 0.69 -1.7 192,886 - PGA1_262p01750 0.69 -0.0 192,917 + PGA1_262p01750 0.71 +0.5 192,917 + PGA1_262p01750 0.71 -1.2 192,991 + PGA1_262p01750 0.76 -0.6 193,202 - PGA1_262p01750 0.89 +0.7 193,305 - -2.3 193,351 - +0.1 193,620 - PGA1_262p01760 0.17 -0.0 193,677 - PGA1_262p01760 0.22 -1.2 193,772 + PGA1_262p01760 0.30 +1.1 193,779 + PGA1_262p01760 0.31 -2.3 193,792 - PGA1_262p01760 0.32 +1.0 193,799 + PGA1_262p01760 0.33 -0.7 193,882 + PGA1_262p01760 0.40 +0.2 193,928 - PGA1_262p01760 0.44 +0.4 193,951 + PGA1_262p01760 0.46 -0.2 193,951 + PGA1_262p01760 0.46 +1.9 193,973 + PGA1_262p01760 0.47 +0.4 193,987 + PGA1_262p01760 0.49 -0.4 194,095 - PGA1_262p01760 0.58 +0.3 194,095 - PGA1_262p01760 0.58 +0.8 194,164 + PGA1_262p01760 0.64 -0.2 194,172 - PGA1_262p01760 0.64 -1.5 194,302 + PGA1_262p01760 0.76 -0.2 194,321 + PGA1_262p01760 0.77 +1.1
Or see this region's nucleotide sequence