Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides PGA1_262p01610 and PGA1_262p01620 are separated by 27 nucleotides PGA1_262p01620 and PGA1_262p01630 are separated by 68 nucleotides
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
PGA1_262p01620: PGA1_262p01620 - Uncharacterized protein conserved in bacteria, at 178,907 to 179,407
_262p01620
PGA1_262p01630: PGA1_262p01630 - hypothetical protein, at 179,476 to 179,721
_262p01630
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610 at 178.136 kb on - strand, within PGA1_262p01610 at 178.214 kb on + strand, within PGA1_262p01610 at 178.343 kb on + strand, within PGA1_262p01610 at 178.606 kb on + strand, within PGA1_262p01610 at 178.664 kb on - strand, within PGA1_262p01610 at 178.715 kb on + strand, within PGA1_262p01610 at 178.755 kb on + strand at 178.755 kb on + strand at 178.758 kb on - strand at 178.763 kb on - strand at 178.881 kb on + strand at 178.894 kb on - strand at 178.947 kb on - strand at 179.050 kb on - strand, within PGA1_262p01620 at 179.253 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.461 kb on + strand at 179.469 kb on - strand at 179.509 kb on + strand, within PGA1_262p01630 at 179.570 kb on + strand, within PGA1_262p01630 at 179.574 kb on - strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.713 kb on + strand at 179.750 kb on - strand at 179.750 kb on - strand at 179.795 kb on + strand at 179.796 kb on + strand at 179.798 kb on - strand at 179.806 kb on + strand at 179.836 kb on + strand at 179.836 kb on - strand at 179.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 176,640 - PGA1_262p01590 0.57 +1.3 176,777 - PGA1_262p01590 0.77 +1.5 176,851 + PGA1_262p01590 0.88 -1.7 176,937 - -1.9 176,939 - +0.7 177,189 + PGA1_262p01600 0.36 +1.7 177,376 + PGA1_262p01600 0.63 +1.7 177,430 - PGA1_262p01600 0.71 -0.6 177,461 - PGA1_262p01600 0.75 +0.9 177,527 - PGA1_262p01600 0.85 -0.0 177,667 + +0.5 177,681 + +1.1 177,747 + +0.1 177,805 + PGA1_262p01610 0.14 -1.9 177,810 + PGA1_262p01610 0.14 +2.3 177,810 + PGA1_262p01610 0.14 +0.1 177,818 - PGA1_262p01610 0.15 +0.7 177,826 + PGA1_262p01610 0.16 -3.3 177,834 - PGA1_262p01610 0.16 -1.2 177,834 - PGA1_262p01610 0.16 +0.3 177,869 + PGA1_262p01610 0.19 -1.2 178,136 - PGA1_262p01610 0.41 -1.0 178,214 + PGA1_262p01610 0.47 -1.7 178,343 + PGA1_262p01610 0.57 +0.1 178,606 + PGA1_262p01610 0.78 +0.8 178,664 - PGA1_262p01610 0.83 -1.3 178,715 + PGA1_262p01610 0.87 +0.5 178,755 + -0.9 178,755 + +0.8 178,758 - +1.2 178,763 - +0.1 178,881 + -0.9 178,894 - +2.4 178,947 - +0.3 179,050 - PGA1_262p01620 0.29 -0.8 179,253 + PGA1_262p01620 0.69 +0.3 179,310 + PGA1_262p01620 0.80 -0.9 179,310 + PGA1_262p01620 0.80 +0.5 179,310 + PGA1_262p01620 0.80 -0.3 179,461 + -0.1 179,469 - -0.5 179,509 + PGA1_262p01630 0.13 -2.2 179,570 + PGA1_262p01630 0.38 +0.8 179,574 - PGA1_262p01630 0.40 +1.6 179,651 + PGA1_262p01630 0.71 -2.3 179,651 + PGA1_262p01630 0.71 +0.4 179,713 + -1.8 179,750 - +0.2 179,750 - +0.5 179,795 + -1.7 179,796 + -0.9 179,798 - -2.3 179,806 + -0.3 179,836 + +0.1 179,836 - -0.4 179,844 - -1.9
Or see this region's nucleotide sequence