Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01200 and PGA1_262p01210 are separated by 4 nucleotides PGA1_262p01210 and PGA1_262p01220 are separated by 3 nucleotides PGA1_262p01220 and PGA1_262p01230 are separated by 12 nucleotides PGA1_262p01230 and PGA1_262p01240 are separated by 130 nucleotides PGA1_262p01240 and PGA1_262p01250 are separated by 74 nucleotides
PGA1_262p01200: PGA1_262p01200 - putative protein NorD, at 131,338 to 133,275
_262p01200
PGA1_262p01210: PGA1_262p01210 - putative protein NorQ, at 133,280 to 134,074
_262p01210
PGA1_262p01220: PGA1_262p01220 - nitric oxide reductase subunit B, at 134,078 to 135,436
_262p01220
PGA1_262p01230: PGA1_262p01230 - nitric oxide reductase subunit C, at 135,449 to 135,901
_262p01230
PGA1_262p01240: PGA1_262p01240 - hydrid cluster protein-associated redox disulfide domain, at 136,032 to 136,259
_262p01240
PGA1_262p01250: PGA1_262p01250 - transcriptional regulator, crp family, at 136,334 to 137,038
_262p01250
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.290 kb on - strand at 133.407 kb on + strand, within PGA1_262p01210 at 133.438 kb on + strand, within PGA1_262p01210 at 133.507 kb on + strand, within PGA1_262p01210 at 133.607 kb on - strand, within PGA1_262p01210 at 133.618 kb on - strand, within PGA1_262p01210 at 133.796 kb on - strand, within PGA1_262p01210 at 133.821 kb on + strand, within PGA1_262p01210 at 133.982 kb on + strand, within PGA1_262p01210 at 133.988 kb on + strand, within PGA1_262p01210 at 134.107 kb on - strand at 134.108 kb on - strand at 134.239 kb on - strand, within PGA1_262p01220 at 134.374 kb on - strand, within PGA1_262p01220 at 134.433 kb on - strand, within PGA1_262p01220 at 134.479 kb on - strand, within PGA1_262p01220 at 134.566 kb on - strand, within PGA1_262p01220 at 134.657 kb on - strand, within PGA1_262p01220 at 134.813 kb on - strand, within PGA1_262p01220 at 134.879 kb on + strand, within PGA1_262p01220 at 134.951 kb on - strand, within PGA1_262p01220 at 134.971 kb on - strand, within PGA1_262p01220 at 135.018 kb on + strand, within PGA1_262p01220 at 135.313 kb on - strand at 135.446 kb on + strand at 135.454 kb on - strand at 135.454 kb on - strand at 135.473 kb on + strand at 135.746 kb on - strand, within PGA1_262p01230 at 135.897 kb on + strand at 135.903 kb on + strand at 135.910 kb on - strand at 136.009 kb on - strand at 136.153 kb on - strand, within PGA1_262p01240 at 136.225 kb on + strand, within PGA1_262p01240 at 136.298 kb on + strand at 136.304 kb on + strand at 136.304 kb on + strand at 136.317 kb on - strand at 136.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 133,290 - +1.4 133,407 + PGA1_262p01210 0.16 -0.4 133,438 + PGA1_262p01210 0.20 +0.8 133,507 + PGA1_262p01210 0.29 -1.8 133,607 - PGA1_262p01210 0.41 +0.2 133,618 - PGA1_262p01210 0.43 -1.5 133,796 - PGA1_262p01210 0.65 -1.0 133,821 + PGA1_262p01210 0.68 +2.2 133,982 + PGA1_262p01210 0.88 +1.3 133,988 + PGA1_262p01210 0.89 -0.5 134,107 - -1.1 134,108 - -0.9 134,239 - PGA1_262p01220 0.12 +0.5 134,374 - PGA1_262p01220 0.22 -0.7 134,433 - PGA1_262p01220 0.26 +0.7 134,479 - PGA1_262p01220 0.30 -1.3 134,566 - PGA1_262p01220 0.36 +1.1 134,657 - PGA1_262p01220 0.43 +0.5 134,813 - PGA1_262p01220 0.54 -0.0 134,879 + PGA1_262p01220 0.59 +0.2 134,951 - PGA1_262p01220 0.64 -0.9 134,971 - PGA1_262p01220 0.66 +2.0 135,018 + PGA1_262p01220 0.69 +2.3 135,313 - +1.5 135,446 + -0.8 135,454 - +0.7 135,454 - +1.7 135,473 + -0.1 135,746 - PGA1_262p01230 0.66 -0.9 135,897 + +0.5 135,903 + -0.3 135,910 - -0.3 136,009 - -0.5 136,153 - PGA1_262p01240 0.53 -1.8 136,225 + PGA1_262p01240 0.85 +0.5 136,298 + -0.3 136,304 + +0.9 136,304 + +2.0 136,317 - +0.7 136,364 - -0.5
Or see this region's nucleotide sequence