Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00530 and PGA1_262p00540 are separated by 74 nucleotides PGA1_262p00540 and PGA1_262p00550 are separated by 169 nucleotides
PGA1_262p00530: PGA1_262p00530 - DNA topoisomerase 1B-like protein, at 61,176 to 62,153
_262p00530
PGA1_262p00540: PGA1_262p00540 - succinate-semialdehyde dehdyrogenase GabD, at 62,228 to 63,607
_262p00540
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.249 kb on + strand at 61.272 kb on - strand at 61.389 kb on + strand, within PGA1_262p00530 at 61.499 kb on + strand, within PGA1_262p00530 at 61.595 kb on + strand, within PGA1_262p00530 at 61.808 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 61.867 kb on - strand, within PGA1_262p00530 at 62.111 kb on + strand at 62.129 kb on - strand at 62.316 kb on + strand at 62.632 kb on + strand, within PGA1_262p00540 at 62.632 kb on + strand, within PGA1_262p00540 at 62.642 kb on + strand, within PGA1_262p00540 at 62.852 kb on + strand, within PGA1_262p00540 at 62.860 kb on - strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.989 kb on + strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 62.997 kb on - strand, within PGA1_262p00540 at 63.015 kb on - strand, within PGA1_262p00540 at 63.054 kb on + strand, within PGA1_262p00540 at 63.124 kb on + strand, within PGA1_262p00540 at 63.172 kb on + strand, within PGA1_262p00540 at 63.182 kb on + strand, within PGA1_262p00540 at 63.190 kb on - strand, within PGA1_262p00540 at 63.206 kb on + strand, within PGA1_262p00540 at 63.284 kb on - strand, within PGA1_262p00540 at 63.409 kb on + strand, within PGA1_262p00540 at 63.425 kb on + strand, within PGA1_262p00540 at 63.517 kb on - strand at 63.547 kb on + strand at 63.602 kb on + strand at 63.629 kb on + strand at 63.655 kb on + strand at 63.819 kb on - strand at 63.916 kb on + strand, within PGA1_262p00550 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 61,249 + +1.7 61,272 - -0.7 61,389 + PGA1_262p00530 0.22 -0.7 61,499 + PGA1_262p00530 0.33 -0.2 61,595 + PGA1_262p00530 0.43 +0.9 61,808 - PGA1_262p00530 0.65 +0.5 61,867 - PGA1_262p00530 0.71 -0.4 61,867 - PGA1_262p00530 0.71 +0.8 62,111 + -1.5 62,129 - +0.3 62,316 + -1.3 62,632 + PGA1_262p00540 0.29 +0.7 62,632 + PGA1_262p00540 0.29 -2.3 62,642 + PGA1_262p00540 0.30 +0.3 62,852 + PGA1_262p00540 0.45 +1.7 62,860 - PGA1_262p00540 0.46 -0.5 62,989 + PGA1_262p00540 0.55 -0.8 62,989 + PGA1_262p00540 0.55 -0.7 62,989 + PGA1_262p00540 0.55 -0.5 62,989 + PGA1_262p00540 0.55 +2.0 62,989 + PGA1_262p00540 0.55 -1.2 62,997 - PGA1_262p00540 0.56 -1.3 62,997 - PGA1_262p00540 0.56 +1.5 62,997 - PGA1_262p00540 0.56 -1.5 63,015 - PGA1_262p00540 0.57 -0.2 63,054 + PGA1_262p00540 0.60 -0.2 63,124 + PGA1_262p00540 0.65 -0.9 63,172 + PGA1_262p00540 0.68 -0.9 63,182 + PGA1_262p00540 0.69 -0.0 63,190 - PGA1_262p00540 0.70 -0.2 63,206 + PGA1_262p00540 0.71 -2.0 63,284 - PGA1_262p00540 0.77 +0.5 63,409 + PGA1_262p00540 0.86 -2.2 63,425 + PGA1_262p00540 0.87 -0.8 63,517 - -1.8 63,547 + +0.5 63,602 + -1.1 63,629 + +0.1 63,655 + -1.0 63,819 - -0.3 63,916 + PGA1_262p00550 0.11 +1.0 64,240 - PGA1_262p00550 0.37 +1.3 64,342 - PGA1_262p00550 0.45 +0.7 64,376 + PGA1_262p00550 0.48 -0.4 64,475 + PGA1_262p00550 0.56 +0.6 64,592 - PGA1_262p00550 0.65 +0.1
Or see this region's nucleotide sequence