Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00390 and PGA1_262p00400 overlap by 8 nucleotides PGA1_262p00400 and PGA1_262p00410 are separated by 11 nucleotides
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
PGA1_262p00400: PGA1_262p00400 - putative cytochrome c peroxidase, at 47,516 to 48,868
_262p00400
PGA1_262p00410: PGA1_262p00410 - ASPIC and UnbV., at 48,880 to 50,436
_262p00410
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.329 kb on + strand, within PGA1_262p00390 at 47.337 kb on - strand, within PGA1_262p00390 at 47.406 kb on + strand, within PGA1_262p00390 at 47.555 kb on + strand at 47.573 kb on - strand at 47.573 kb on - strand at 47.596 kb on - strand at 47.681 kb on - strand, within PGA1_262p00400 at 47.739 kb on + strand, within PGA1_262p00400 at 47.762 kb on + strand, within PGA1_262p00400 at 47.771 kb on + strand, within PGA1_262p00400 at 47.881 kb on - strand, within PGA1_262p00400 at 48.265 kb on - strand, within PGA1_262p00400 at 48.426 kb on - strand, within PGA1_262p00400 at 48.885 kb on - strand at 49.066 kb on + strand, within PGA1_262p00410 at 49.089 kb on - strand, within PGA1_262p00410 at 49.091 kb on + strand, within PGA1_262p00410 at 49.133 kb on - strand, within PGA1_262p00410 at 49.185 kb on + strand, within PGA1_262p00410 at 49.233 kb on + strand, within PGA1_262p00410 at 49.312 kb on + strand, within PGA1_262p00410 at 49.626 kb on - strand, within PGA1_262p00410 at 49.720 kb on - strand, within PGA1_262p00410 at 49.805 kb on + strand, within PGA1_262p00410
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 46,518 + +0.1 46,666 - PGA1_262p00390 0.19 -0.9 46,763 + PGA1_262p00390 0.28 +1.3 46,808 - PGA1_262p00390 0.32 -0.3 46,869 + PGA1_262p00390 0.38 +0.5 46,872 + PGA1_262p00390 0.38 +0.4 46,966 - PGA1_262p00390 0.47 +0.3 46,971 + PGA1_262p00390 0.48 -0.2 46,971 + PGA1_262p00390 0.48 -0.5 46,971 + PGA1_262p00390 0.48 +0.3 46,976 + PGA1_262p00390 0.48 -1.0 47,066 + PGA1_262p00390 0.57 -0.2 47,329 + PGA1_262p00390 0.82 -0.3 47,329 + PGA1_262p00390 0.82 +0.5 47,329 + PGA1_262p00390 0.82 +0.2 47,337 - PGA1_262p00390 0.82 -0.1 47,406 + PGA1_262p00390 0.89 -1.7 47,555 + +0.7 47,573 - +1.4 47,573 - -0.4 47,596 - -0.8 47,681 - PGA1_262p00400 0.12 -1.8 47,739 + PGA1_262p00400 0.16 -1.2 47,762 + PGA1_262p00400 0.18 -1.9 47,771 + PGA1_262p00400 0.19 -0.2 47,881 - PGA1_262p00400 0.27 +0.3 48,265 - PGA1_262p00400 0.55 -0.9 48,426 - PGA1_262p00400 0.67 +0.9 48,885 - +1.4 49,066 + PGA1_262p00410 0.12 +0.3 49,089 - PGA1_262p00410 0.13 -0.9 49,091 + PGA1_262p00410 0.14 -1.0 49,133 - PGA1_262p00410 0.16 -1.2 49,185 + PGA1_262p00410 0.20 -1.6 49,233 + PGA1_262p00410 0.23 +1.1 49,312 + PGA1_262p00410 0.28 -0.6 49,626 - PGA1_262p00410 0.48 -0.9 49,720 - PGA1_262p00410 0.54 +0.6 49,805 + PGA1_262p00410 0.59 -1.9
Or see this region's nucleotide sequence