Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00370 and PGA1_262p00380 are separated by 120 nucleotides PGA1_262p00380 and PGA1_262p00390 are separated by 353 nucleotides
PGA1_262p00370: PGA1_262p00370 - putative polysaccharide synthase, at 43,814 to 45,307
_262p00370
PGA1_262p00380: PGA1_262p00380 - sugar transferase, at 45,428 to 46,111
_262p00380
PGA1_262p00390: PGA1_262p00390 - aldose 1-epimerase, at 46,465 to 47,523
_262p00390
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 44.491 kb on - strand, within PGA1_262p00370 at 44.566 kb on - strand, within PGA1_262p00370 at 44.760 kb on + strand, within PGA1_262p00370 at 44.773 kb on - strand, within PGA1_262p00370 at 45.037 kb on - strand, within PGA1_262p00370 at 45.047 kb on - strand, within PGA1_262p00370 at 45.096 kb on - strand, within PGA1_262p00370 at 45.277 kb on + strand at 45.279 kb on + strand at 45.365 kb on + strand at 45.392 kb on + strand at 45.392 kb on + strand at 45.400 kb on - strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.410 kb on - strand at 45.413 kb on + strand at 45.413 kb on + strand at 45.428 kb on + strand at 45.535 kb on + strand, within PGA1_262p00380 at 45.543 kb on - strand, within PGA1_262p00380 at 45.565 kb on - strand, within PGA1_262p00380 at 45.608 kb on - strand, within PGA1_262p00380 at 45.769 kb on + strand, within PGA1_262p00380 at 45.788 kb on + strand, within PGA1_262p00380 at 45.796 kb on - strand, within PGA1_262p00380 at 45.881 kb on + strand, within PGA1_262p00380 at 45.890 kb on - strand, within PGA1_262p00380 at 46.146 kb on - strand at 46.149 kb on + strand at 46.254 kb on - strand at 46.290 kb on - strand at 46.290 kb on - strand at 46.308 kb on - strand at 46.318 kb on + strand at 46.431 kb on - strand at 46.432 kb on - strand at 46.460 kb on - strand at 46.518 kb on + strand at 46.666 kb on - strand, within PGA1_262p00390 at 46.763 kb on + strand, within PGA1_262p00390 at 46.808 kb on - strand, within PGA1_262p00390 at 46.869 kb on + strand, within PGA1_262p00390 at 46.872 kb on + strand, within PGA1_262p00390 at 46.966 kb on - strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.971 kb on + strand, within PGA1_262p00390 at 46.976 kb on + strand, within PGA1_262p00390 at 47.066 kb on + strand, within PGA1_262p00390
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 44,491 - PGA1_262p00370 0.45 +1.0 44,566 - PGA1_262p00370 0.50 -0.6 44,760 + PGA1_262p00370 0.63 +0.4 44,773 - PGA1_262p00370 0.64 -1.3 45,037 - PGA1_262p00370 0.82 -1.7 45,047 - PGA1_262p00370 0.83 +0.1 45,096 - PGA1_262p00370 0.86 -0.7 45,277 + +1.0 45,279 + -1.5 45,365 + +0.4 45,392 + +0.5 45,392 + -0.4 45,400 - -2.3 45,402 + -1.0 45,402 + +0.8 45,402 + +1.3 45,402 + -1.2 45,407 + -0.8 45,407 + -2.0 45,407 + +0.9 45,410 - -0.0 45,413 + -2.3 45,413 + -0.8 45,428 + +1.2 45,535 + PGA1_262p00380 0.16 -1.5 45,543 - PGA1_262p00380 0.17 +0.7 45,565 - PGA1_262p00380 0.20 +1.4 45,608 - PGA1_262p00380 0.26 -0.7 45,769 + PGA1_262p00380 0.50 -0.3 45,788 + PGA1_262p00380 0.53 +0.2 45,796 - PGA1_262p00380 0.54 +0.4 45,881 + PGA1_262p00380 0.66 +0.9 45,890 - PGA1_262p00380 0.68 +1.2 46,146 - +0.1 46,149 + +0.7 46,254 - -0.2 46,290 - +0.1 46,290 - +1.5 46,308 - -1.2 46,318 + -0.1 46,431 - -1.4 46,432 - +0.4 46,460 - +0.4 46,518 + +0.1 46,666 - PGA1_262p00390 0.19 -0.9 46,763 + PGA1_262p00390 0.28 +1.3 46,808 - PGA1_262p00390 0.32 -0.3 46,869 + PGA1_262p00390 0.38 +0.5 46,872 + PGA1_262p00390 0.38 +0.4 46,966 - PGA1_262p00390 0.47 +0.3 46,971 + PGA1_262p00390 0.48 -0.2 46,971 + PGA1_262p00390 0.48 -0.5 46,971 + PGA1_262p00390 0.48 +0.3 46,976 + PGA1_262p00390 0.48 -1.0 47,066 + PGA1_262p00390 0.57 -0.2
Or see this region's nucleotide sequence