Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00190 and PGA1_262p00200 are separated by 68 nucleotides PGA1_262p00200 and PGA1_262p00210 are separated by 72 nucleotides
PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694
_262p00190
PGA1_262p00200: PGA1_262p00200 - transcriptional regulator, LysR family, at 23,763 to 24,689
_262p00200
PGA1_262p00210: PGA1_262p00210 - alcohol dehydrogenase AlkJ, at 24,762 to 26,420
_262p00210
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 23.009 kb on - strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.073 kb on + strand, within PGA1_262p00190 at 23.081 kb on - strand, within PGA1_262p00190 at 23.218 kb on + strand, within PGA1_262p00190 at 23.519 kb on + strand, within PGA1_262p00190 at 23.632 kb on - strand at 23.649 kb on - strand at 23.649 kb on - strand at 23.728 kb on - strand at 23.762 kb on - strand at 23.804 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.855 kb on + strand at 24.111 kb on - strand, within PGA1_262p00200 at 24.131 kb on + strand, within PGA1_262p00200 at 24.139 kb on - strand, within PGA1_262p00200 at 24.154 kb on - strand, within PGA1_262p00200 at 24.309 kb on - strand, within PGA1_262p00200 at 24.374 kb on + strand, within PGA1_262p00200 at 24.489 kb on - strand, within PGA1_262p00200 at 24.491 kb on + strand, within PGA1_262p00200 at 24.562 kb on - strand, within PGA1_262p00200 at 24.569 kb on + strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.613 kb on - strand at 24.642 kb on + strand at 24.710 kb on - strand at 24.870 kb on + strand at 25.035 kb on + strand, within PGA1_262p00210 at 25.299 kb on + strand, within PGA1_262p00210 at 25.302 kb on - strand, within PGA1_262p00210 at 25.318 kb on - strand, within PGA1_262p00210 at 25.450 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.672 kb on - strand, within PGA1_262p00210 at 25.677 kb on - strand, within PGA1_262p00210
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 23,009 - PGA1_262p00190 0.48 +2.5 23,052 + PGA1_262p00190 0.51 +1.1 23,052 + PGA1_262p00190 0.51 +0.1 23,052 + PGA1_262p00190 0.51 +1.3 23,052 + PGA1_262p00190 0.51 -0.4 23,052 + PGA1_262p00190 0.51 +0.7 23,060 - PGA1_262p00190 0.52 -0.2 23,060 - PGA1_262p00190 0.52 -0.7 23,060 - PGA1_262p00190 0.52 +0.3 23,060 - PGA1_262p00190 0.52 +1.3 23,060 - PGA1_262p00190 0.52 +0.7 23,060 - PGA1_262p00190 0.52 -0.3 23,060 - PGA1_262p00190 0.52 +3.8 23,060 - PGA1_262p00190 0.52 +0.7 23,073 + PGA1_262p00190 0.53 +0.9 23,081 - PGA1_262p00190 0.53 +1.1 23,218 + PGA1_262p00190 0.64 +0.4 23,519 + PGA1_262p00190 0.87 +1.3 23,632 - +0.3 23,649 - +0.7 23,649 - -0.7 23,728 - -0.9 23,762 - -0.3 23,804 + -0.9 23,838 + +2.7 23,838 + +0.3 23,855 + -0.2 24,111 - PGA1_262p00200 0.38 +1.7 24,131 + PGA1_262p00200 0.40 -0.9 24,139 - PGA1_262p00200 0.41 -0.2 24,154 - PGA1_262p00200 0.42 +0.4 24,309 - PGA1_262p00200 0.59 +1.0 24,374 + PGA1_262p00200 0.66 -0.0 24,489 - PGA1_262p00200 0.78 -0.3 24,491 + PGA1_262p00200 0.79 -0.9 24,562 - PGA1_262p00200 0.86 +0.3 24,569 + PGA1_262p00200 0.87 +0.8 24,577 - PGA1_262p00200 0.88 +0.7 24,577 - PGA1_262p00200 0.88 +0.1 24,577 - PGA1_262p00200 0.88 -0.6 24,577 - PGA1_262p00200 0.88 +0.1 24,613 - -1.2 24,642 + -0.7 24,710 - +1.0 24,870 + +0.5 25,035 + PGA1_262p00210 0.16 -2.7 25,299 + PGA1_262p00210 0.32 -0.5 25,302 - PGA1_262p00210 0.33 -0.0 25,318 - PGA1_262p00210 0.34 -0.3 25,450 + PGA1_262p00210 0.41 +2.2 25,474 + PGA1_262p00210 0.43 +0.3 25,474 + PGA1_262p00210 0.43 -0.2 25,474 + PGA1_262p00210 0.43 -0.3 25,474 + PGA1_262p00210 0.43 -1.3 25,672 - PGA1_262p00210 0.55 +0.7 25,677 - PGA1_262p00210 0.55 -0.0
Or see this region's nucleotide sequence