Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34050

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34040 and PGA1_c34050 overlap by 25 nucleotidesPGA1_c34050 and PGA1_c34060 are separated by 404 nucleotides PGA1_c34040: PGA1_c34040 - thiamine transport system permease protein ThiP, at 3,567,119 to 3,568,675 _c34040 PGA1_c34050: PGA1_c34050 - thiamine-binding periplasmic protein ThiB, at 3,568,651 to 3,569,628 _c34050 PGA1_c34060: PGA1_c34060 - chorismate synthase AroC, at 3,570,033 to 3,571,139 _c34060 Position (kb) 3568 3569 3570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3567.723 kb on - strand, within PGA1_c34040at 3567.757 kb on + strand, within PGA1_c34040at 3567.772 kb on - strand, within PGA1_c34040at 3567.875 kb on + strand, within PGA1_c34040at 3567.875 kb on + strand, within PGA1_c34040at 3567.883 kb on - strand, within PGA1_c34040at 3567.883 kb on - strand, within PGA1_c34040at 3567.883 kb on - strand, within PGA1_c34040at 3567.883 kb on - strand, within PGA1_c34040at 3567.892 kb on + strand, within PGA1_c34040at 3567.900 kb on + strand, within PGA1_c34040at 3567.918 kb on + strand, within PGA1_c34040at 3567.957 kb on + strand, within PGA1_c34040at 3567.957 kb on + strand, within PGA1_c34040at 3567.957 kb on + strand, within PGA1_c34040at 3567.965 kb on - strand, within PGA1_c34040at 3567.965 kb on - strand, within PGA1_c34040at 3567.977 kb on + strand, within PGA1_c34040at 3567.985 kb on - strand, within PGA1_c34040at 3567.985 kb on - strand, within PGA1_c34040at 3568.018 kb on + strand, within PGA1_c34040at 3568.026 kb on - strand, within PGA1_c34040at 3568.026 kb on - strand, within PGA1_c34040at 3568.029 kb on - strand, within PGA1_c34040at 3568.034 kb on - strand, within PGA1_c34040at 3568.060 kb on + strand, within PGA1_c34040at 3568.153 kb on + strand, within PGA1_c34040at 3568.155 kb on + strand, within PGA1_c34040at 3568.167 kb on + strand, within PGA1_c34040at 3568.167 kb on + strand, within PGA1_c34040at 3568.171 kb on - strand, within PGA1_c34040at 3568.186 kb on + strand, within PGA1_c34040at 3568.270 kb on + strand, within PGA1_c34040at 3568.278 kb on - strand, within PGA1_c34040at 3568.278 kb on - strand, within PGA1_c34040at 3568.278 kb on - strand, within PGA1_c34040at 3568.287 kb on + strand, within PGA1_c34040at 3568.292 kb on + strand, within PGA1_c34040at 3568.293 kb on - strand, within PGA1_c34040at 3568.303 kb on + strand, within PGA1_c34040at 3568.308 kb on + strand, within PGA1_c34040at 3568.308 kb on + strand, within PGA1_c34040at 3568.316 kb on - strand, within PGA1_c34040at 3568.349 kb on + strand, within PGA1_c34040at 3568.488 kb on - strand, within PGA1_c34040at 3568.497 kb on + strand, within PGA1_c34040at 3568.497 kb on + strand, within PGA1_c34040at 3568.513 kb on + strand, within PGA1_c34040at 3568.528 kb on + strandat 3568.557 kb on - strandat 3568.557 kb on - strandat 3568.568 kb on - strandat 3568.583 kb on - strandat 3568.604 kb on + strandat 3568.612 kb on - strandat 3568.631 kb on + strandat 3568.631 kb on + strandat 3568.665 kb on - strandat 3568.683 kb on + strandat 3568.760 kb on + strand, within PGA1_c34050at 3568.768 kb on - strand, within PGA1_c34050at 3568.797 kb on + strand, within PGA1_c34050at 3568.850 kb on - strand, within PGA1_c34050at 3568.904 kb on + strand, within PGA1_c34050at 3568.928 kb on + strand, within PGA1_c34050at 3568.982 kb on - strand, within PGA1_c34050at 3568.994 kb on + strand, within PGA1_c34050at 3568.994 kb on + strand, within PGA1_c34050at 3568.994 kb on + strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.002 kb on - strand, within PGA1_c34050at 3569.029 kb on + strand, within PGA1_c34050at 3569.034 kb on + strand, within PGA1_c34050at 3569.132 kb on - strand, within PGA1_c34050at 3569.151 kb on - strand, within PGA1_c34050at 3569.151 kb on - strand, within PGA1_c34050at 3569.154 kb on + strand, within PGA1_c34050at 3569.162 kb on - strand, within PGA1_c34050at 3569.195 kb on + strand, within PGA1_c34050at 3569.203 kb on - strand, within PGA1_c34050at 3569.266 kb on + strand, within PGA1_c34050at 3569.266 kb on + strand, within PGA1_c34050at 3569.274 kb on - strand, within PGA1_c34050at 3569.274 kb on - strand, within PGA1_c34050at 3569.296 kb on + strand, within PGA1_c34050at 3569.305 kb on - strand, within PGA1_c34050at 3569.313 kb on + strand, within PGA1_c34050at 3569.383 kb on + strand, within PGA1_c34050at 3569.428 kb on - strand, within PGA1_c34050at 3569.456 kb on + strand, within PGA1_c34050at 3569.456 kb on + strand, within PGA1_c34050at 3569.464 kb on - strand, within PGA1_c34050at 3569.583 kb on - strandat 3569.583 kb on - strandat 3569.601 kb on - strandat 3569.613 kb on + strandat 3569.614 kb on + strandat 3569.650 kb on + strandat 3569.658 kb on - strandat 3569.661 kb on + strandat 3569.688 kb on + strandat 3569.720 kb on - strandat 3569.738 kb on + strandat 3569.755 kb on + strandat 3569.762 kb on + strandat 3569.763 kb on - strandat 3569.800 kb on - strandat 3569.849 kb on + strandat 3569.849 kb on + strandat 3569.857 kb on - strandat 3569.857 kb on - strandat 3569.857 kb on - strandat 3569.880 kb on + strandat 3569.889 kb on - strandat 3569.952 kb on + strandat 3569.958 kb on - strandat 3569.979 kb on + strandat 3569.979 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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3,567,723 - PGA1_c34040 0.39 -1.5
3,567,757 + PGA1_c34040 0.41 +0.3
3,567,772 - PGA1_c34040 0.42 +1.0
3,567,875 + PGA1_c34040 0.49 -0.4
3,567,875 + PGA1_c34040 0.49 +1.8
3,567,883 - PGA1_c34040 0.49 -0.2
3,567,883 - PGA1_c34040 0.49 +0.0
3,567,883 - PGA1_c34040 0.49 -0.1
3,567,883 - PGA1_c34040 0.49 +1.1
3,567,892 + PGA1_c34040 0.50 -1.0
3,567,900 + PGA1_c34040 0.50 -2.0
3,567,918 + PGA1_c34040 0.51 -0.3
3,567,957 + PGA1_c34040 0.54 +1.5
3,567,957 + PGA1_c34040 0.54 -1.1
3,567,957 + PGA1_c34040 0.54 +0.6
3,567,965 - PGA1_c34040 0.54 -0.7
3,567,965 - PGA1_c34040 0.54 +0.5
3,567,977 + PGA1_c34040 0.55 +0.7
3,567,985 - PGA1_c34040 0.56 +1.0
3,567,985 - PGA1_c34040 0.56 +0.8
3,568,018 + PGA1_c34040 0.58 +0.9
3,568,026 - PGA1_c34040 0.58 -2.2
3,568,026 - PGA1_c34040 0.58 +0.1
3,568,029 - PGA1_c34040 0.58 +1.2
3,568,034 - PGA1_c34040 0.59 -0.0
3,568,060 + PGA1_c34040 0.60 -0.0
3,568,153 + PGA1_c34040 0.66 +0.6
3,568,155 + PGA1_c34040 0.67 -0.3
3,568,167 + PGA1_c34040 0.67 -0.2
3,568,167 + PGA1_c34040 0.67 -0.3
3,568,171 - PGA1_c34040 0.68 +0.6
3,568,186 + PGA1_c34040 0.69 -0.1
3,568,270 + PGA1_c34040 0.74 -0.1
3,568,278 - PGA1_c34040 0.74 +1.9
3,568,278 - PGA1_c34040 0.74 +0.9
3,568,278 - PGA1_c34040 0.74 +1.2
3,568,287 + PGA1_c34040 0.75 -1.0
3,568,292 + PGA1_c34040 0.75 +0.6
3,568,293 - PGA1_c34040 0.75 +0.7
3,568,303 + PGA1_c34040 0.76 -0.3
3,568,308 + PGA1_c34040 0.76 -0.9
3,568,308 + PGA1_c34040 0.76 +1.2
3,568,316 - PGA1_c34040 0.77 -0.1
3,568,349 + PGA1_c34040 0.79 +1.1
3,568,488 - PGA1_c34040 0.88 +0.5
3,568,497 + PGA1_c34040 0.89 -1.0
3,568,497 + PGA1_c34040 0.89 +1.3
3,568,513 + PGA1_c34040 0.90 +0.4
3,568,528 + +0.9
3,568,557 - +1.3
3,568,557 - +0.7
3,568,568 - -1.3
3,568,583 - -0.8
3,568,604 + +0.1
3,568,612 - -0.9
3,568,631 + -1.9
3,568,631 + +0.3
3,568,665 - +0.1
3,568,683 + +0.4
3,568,760 + PGA1_c34050 0.11 +0.6
3,568,768 - PGA1_c34050 0.12 +1.7
3,568,797 + PGA1_c34050 0.15 +0.4
3,568,850 - PGA1_c34050 0.20 +1.1
3,568,904 + PGA1_c34050 0.26 +0.9
3,568,928 + PGA1_c34050 0.28 +0.1
3,568,982 - PGA1_c34050 0.34 -0.8
3,568,994 + PGA1_c34050 0.35 +1.7
3,568,994 + PGA1_c34050 0.35 +1.1
3,568,994 + PGA1_c34050 0.35 +0.5
3,569,002 - PGA1_c34050 0.36 +0.7
3,569,002 - PGA1_c34050 0.36 +0.2
3,569,002 - PGA1_c34050 0.36 +0.7
3,569,002 - PGA1_c34050 0.36 -0.8
3,569,002 - PGA1_c34050 0.36 +0.7
3,569,002 - PGA1_c34050 0.36 +0.0
3,569,002 - PGA1_c34050 0.36 +0.4
3,569,029 + PGA1_c34050 0.39 -2.3
3,569,034 + PGA1_c34050 0.39 +1.4
3,569,132 - PGA1_c34050 0.49 -0.4
3,569,151 - PGA1_c34050 0.51 +2.2
3,569,151 - PGA1_c34050 0.51 -0.1
3,569,154 + PGA1_c34050 0.51 +1.2
3,569,162 - PGA1_c34050 0.52 +0.9
3,569,195 + PGA1_c34050 0.56 +0.8
3,569,203 - PGA1_c34050 0.56 -2.9
3,569,266 + PGA1_c34050 0.63 +2.0
3,569,266 + PGA1_c34050 0.63 -1.0
3,569,274 - PGA1_c34050 0.64 +0.6
3,569,274 - PGA1_c34050 0.64 +1.8
3,569,296 + PGA1_c34050 0.66 +0.7
3,569,305 - PGA1_c34050 0.67 -1.4
3,569,313 + PGA1_c34050 0.68 +0.9
3,569,383 + PGA1_c34050 0.75 +0.3
3,569,428 - PGA1_c34050 0.79 +0.0
3,569,456 + PGA1_c34050 0.82 +1.0
3,569,456 + PGA1_c34050 0.82 -1.2
3,569,464 - PGA1_c34050 0.83 +0.3
3,569,583 - +0.9
3,569,583 - +0.3
3,569,601 - -0.6
3,569,613 + +1.3
3,569,614 + +1.3
3,569,650 + -0.1
3,569,658 - +1.5
3,569,661 + +0.6
3,569,688 + -0.3
3,569,720 - -0.0
3,569,738 + -0.7
3,569,755 + +0.7
3,569,762 + +0.1
3,569,763 - +1.2
3,569,800 - +0.7
3,569,849 + -2.1
3,569,849 + -0.8
3,569,857 - -2.4
3,569,857 - -0.9
3,569,857 - +0.5
3,569,880 + -1.1
3,569,889 - +0.5
3,569,952 + -0.7
3,569,958 - -2.2
3,569,979 + -1.4
3,569,979 + +0.5

Or see this region's nucleotide sequence