Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03260

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03240 and PGA1_c03250 overlap by 4 nucleotidesPGA1_c03250 and PGA1_c03260 overlap by 4 nucleotidesPGA1_c03260 and PGA1_c03270 overlap by 4 nucleotides PGA1_c03240: PGA1_c03240 - probable molybdopterin-guanine dinucleotide biosynthesis protein A, at 310,456 to 311,097 _c03240 PGA1_c03250: PGA1_c03250 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 311,094 to 311,585 _c03250 PGA1_c03260: PGA1_c03260 - hypothetical protein, at 311,582 to 312,394 _c03260 PGA1_c03270: PGA1_c03270 - molybdopterin molybdenumtransferase MoeA, at 312,391 to 313,647 _c03270 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 310.639 kb on + strand, within PGA1_c03240at 310.675 kb on - strand, within PGA1_c03240at 310.707 kb on - strand, within PGA1_c03240at 310.721 kb on - strand, within PGA1_c03240at 310.811 kb on + strand, within PGA1_c03240at 310.816 kb on + strand, within PGA1_c03240at 310.922 kb on + strand, within PGA1_c03240at 310.971 kb on - strand, within PGA1_c03240at 310.981 kb on - strand, within PGA1_c03240at 310.990 kb on + strand, within PGA1_c03240at 310.998 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.024 kb on - strand, within PGA1_c03240at 311.049 kb on + strandat 311.057 kb on - strandat 311.076 kb on + strandat 311.099 kb on + strandat 311.099 kb on + strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.107 kb on - strandat 311.109 kb on + strandat 311.124 kb on - strandat 311.179 kb on + strand, within PGA1_c03250at 311.208 kb on + strand, within PGA1_c03250at 311.221 kb on - strand, within PGA1_c03250at 311.270 kb on + strand, within PGA1_c03250at 311.331 kb on + strand, within PGA1_c03250at 311.376 kb on + strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.411 kb on - strand, within PGA1_c03250at 311.420 kb on + strand, within PGA1_c03250at 311.422 kb on - strand, within PGA1_c03250at 311.452 kb on + strand, within PGA1_c03250at 311.499 kb on + strand, within PGA1_c03250at 311.508 kb on + strand, within PGA1_c03250at 311.537 kb on - strandat 311.598 kb on + strandat 311.617 kb on - strandat 311.630 kb on + strandat 311.637 kb on + strandat 311.637 kb on + strandat 311.668 kb on - strand, within PGA1_c03260at 311.707 kb on - strand, within PGA1_c03260at 311.757 kb on - strand, within PGA1_c03260at 311.841 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.871 kb on + strand, within PGA1_c03260at 311.913 kb on + strand, within PGA1_c03260at 311.952 kb on + strand, within PGA1_c03260at 311.962 kb on + strand, within PGA1_c03260at 311.975 kb on - strand, within PGA1_c03260at 311.984 kb on - strand, within PGA1_c03260at 311.990 kb on + strand, within PGA1_c03260at 311.998 kb on - strand, within PGA1_c03260at 312.016 kb on + strand, within PGA1_c03260at 312.048 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.050 kb on + strand, within PGA1_c03260at 312.056 kb on - strand, within PGA1_c03260at 312.058 kb on - strand, within PGA1_c03260at 312.121 kb on + strand, within PGA1_c03260at 312.162 kb on + strand, within PGA1_c03260at 312.187 kb on + strand, within PGA1_c03260at 312.207 kb on - strand, within PGA1_c03260at 312.226 kb on - strand, within PGA1_c03260at 312.236 kb on + strand, within PGA1_c03260at 312.265 kb on + strand, within PGA1_c03260at 312.292 kb on - strand, within PGA1_c03260at 312.345 kb on - strandat 312.345 kb on - strandat 312.364 kb on + strandat 312.442 kb on + strandat 312.536 kb on + strand, within PGA1_c03270at 312.618 kb on - strand, within PGA1_c03270at 312.692 kb on + strand, within PGA1_c03270at 312.747 kb on + strand, within PGA1_c03270at 312.755 kb on - strand, within PGA1_c03270at 312.874 kb on + strand, within PGA1_c03270at 312.887 kb on - strand, within PGA1_c03270at 312.893 kb on - strand, within PGA1_c03270at 312.971 kb on + strand, within PGA1_c03270at 313.011 kb on + strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.069 kb on - strand, within PGA1_c03270at 313.137 kb on + strand, within PGA1_c03270at 313.137 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.150 kb on - strand, within PGA1_c03270at 313.202 kb on + strand, within PGA1_c03270at 313.350 kb on + strand, within PGA1_c03270

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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310,639 + PGA1_c03240 0.29 +1.5
310,675 - PGA1_c03240 0.34 +0.1
310,707 - PGA1_c03240 0.39 +1.5
310,721 - PGA1_c03240 0.41 +1.5
310,811 + PGA1_c03240 0.55 +0.2
310,816 + PGA1_c03240 0.56 +0.5
310,922 + PGA1_c03240 0.73 -0.6
310,971 - PGA1_c03240 0.80 -0.2
310,981 - PGA1_c03240 0.82 -1.0
310,990 + PGA1_c03240 0.83 +0.1
310,998 - PGA1_c03240 0.84 -0.9
311,024 - PGA1_c03240 0.88 +0.4
311,024 - PGA1_c03240 0.88 -0.4
311,049 + -1.2
311,057 - -0.0
311,076 + -0.7
311,099 + -0.6
311,099 + +0.5
311,107 - +0.1
311,107 - -0.0
311,107 - -0.7
311,107 - -0.9
311,107 - -1.3
311,109 + +0.9
311,124 - +0.4
311,179 + PGA1_c03250 0.17 +0.8
311,208 + PGA1_c03250 0.23 -0.2
311,221 - PGA1_c03250 0.26 -1.4
311,270 + PGA1_c03250 0.36 -1.3
311,331 + PGA1_c03250 0.48 +1.5
311,376 + PGA1_c03250 0.57 +0.4
311,411 - PGA1_c03250 0.64 +1.0
311,411 - PGA1_c03250 0.64 -1.0
311,420 + PGA1_c03250 0.66 +0.4
311,422 - PGA1_c03250 0.67 -0.4
311,452 + PGA1_c03250 0.73 +0.8
311,499 + PGA1_c03250 0.82 +0.2
311,508 + PGA1_c03250 0.84 +0.4
311,537 - -2.3
311,598 + +1.4
311,617 - +0.0
311,630 + +1.0
311,637 + -0.0
311,637 + +0.1
311,668 - PGA1_c03260 0.11 +0.3
311,707 - PGA1_c03260 0.15 +1.4
311,757 - PGA1_c03260 0.22 +0.5
311,841 + PGA1_c03260 0.32 +0.4
311,871 + PGA1_c03260 0.36 +2.7
311,871 + PGA1_c03260 0.36 +0.8
311,871 + PGA1_c03260 0.36 +1.1
311,913 + PGA1_c03260 0.41 -1.2
311,952 + PGA1_c03260 0.46 -0.4
311,962 + PGA1_c03260 0.47 -0.8
311,975 - PGA1_c03260 0.48 +0.5
311,984 - PGA1_c03260 0.49 +1.7
311,990 + PGA1_c03260 0.50 +1.4
311,998 - PGA1_c03260 0.51 -0.7
312,016 + PGA1_c03260 0.53 +1.1
312,048 + PGA1_c03260 0.57 +0.2
312,050 + PGA1_c03260 0.58 +0.5
312,050 + PGA1_c03260 0.58 +1.1
312,050 + PGA1_c03260 0.58 +0.5
312,050 + PGA1_c03260 0.58 -0.2
312,056 - PGA1_c03260 0.58 +1.1
312,058 - PGA1_c03260 0.59 +0.8
312,121 + PGA1_c03260 0.66 -1.8
312,162 + PGA1_c03260 0.71 -2.2
312,187 + PGA1_c03260 0.74 +1.2
312,207 - PGA1_c03260 0.77 -0.1
312,226 - PGA1_c03260 0.79 +1.5
312,236 + PGA1_c03260 0.80 -0.5
312,265 + PGA1_c03260 0.84 -0.1
312,292 - PGA1_c03260 0.87 -0.7
312,345 - -1.2
312,345 - +0.7
312,364 + -0.5
312,442 + -1.6
312,536 + PGA1_c03270 0.12 -0.4
312,618 - PGA1_c03270 0.18 +0.1
312,692 + PGA1_c03270 0.24 +0.4
312,747 + PGA1_c03270 0.28 +1.1
312,755 - PGA1_c03270 0.29 -2.5
312,874 + PGA1_c03270 0.38 +0.6
312,887 - PGA1_c03270 0.39 -0.6
312,893 - PGA1_c03270 0.40 -0.8
312,971 + PGA1_c03270 0.46 +0.5
313,011 + PGA1_c03270 0.49 -1.9
313,069 - PGA1_c03270 0.54 +1.0
313,069 - PGA1_c03270 0.54 +0.2
313,137 + PGA1_c03270 0.59 +0.3
313,137 - PGA1_c03270 0.59 +0.8
313,150 - PGA1_c03270 0.60 -0.3
313,150 - PGA1_c03270 0.60 +0.4
313,202 + PGA1_c03270 0.65 +0.7
313,350 + PGA1_c03270 0.76 -2.6

Or see this region's nucleotide sequence