Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25530

Experiment: Carbon source L-Ornithine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source L-Ornithine 5 mM
2,656,656	-				-1.6
2,656,665	+				+0.4
2,656,673	+				+0.6
2,656,681	-				+0.5
2,656,709	+				-0.1
2,656,710	+				+0.7
2,656,713	-				-1.0
2,656,717	-				+1.4
2,656,774	-				+1.1
2,656,774	-				+0.3
2,656,793	+				-2.4
2,656,877	+		PGA1_c25520	0.16	+1.5
2,656,890	+		PGA1_c25520	0.17	+1.5
2,656,890	+		PGA1_c25520	0.17	-1.4
2,656,890	+		PGA1_c25520	0.17	-1.0
2,656,890	+		PGA1_c25520	0.17	-0.1
2,656,898	-		PGA1_c25520	0.18	+0.1
2,656,900	-		PGA1_c25520	0.18	-0.8
2,656,926	-		PGA1_c25520	0.21	-0.1
2,656,926	-		PGA1_c25520	0.21	+0.2
2,656,950	+		PGA1_c25520	0.23	-1.0
2,656,950	-		PGA1_c25520	0.23	+0.7
2,656,997	-		PGA1_c25520	0.28	+0.5
2,656,999	+		PGA1_c25520	0.28	+0.5
2,656,999	+		PGA1_c25520	0.28	-1.1
2,656,999	+		PGA1_c25520	0.28	+1.2
2,657,003	+		PGA1_c25520	0.28	-0.6
2,657,007	-		PGA1_c25520	0.29	-0.5
2,657,007	-		PGA1_c25520	0.29	-1.6
2,657,007	-		PGA1_c25520	0.29	+0.6
2,657,033	+		PGA1_c25520	0.31	-0.4
2,657,079	-		PGA1_c25520	0.36	+0.4
2,657,082	+		PGA1_c25520	0.36	-2.4
2,657,090	-		PGA1_c25520	0.37	-1.1
2,657,092	+		PGA1_c25520	0.37	-1.0
2,657,100	-		PGA1_c25520	0.38	-0.0
2,657,141	-		PGA1_c25520	0.42	+0.9
2,657,141	-		PGA1_c25520	0.42	-0.1
2,657,183	+		PGA1_c25520	0.46	+0.9
2,657,183	+		PGA1_c25520	0.46	+2.1
2,657,183	+		PGA1_c25520	0.46	+1.0
2,657,191	-		PGA1_c25520	0.47	+0.1
2,657,249	+		PGA1_c25520	0.52	-0.7
2,657,277	+		PGA1_c25520	0.55	-0.7
2,657,284	-		PGA1_c25520	0.56	+0.0
2,657,285	-		PGA1_c25520	0.56	+2.1
2,657,291	-		PGA1_c25520	0.57	-1.2
2,657,292	-		PGA1_c25520	0.57	-2.2
2,657,327	-		PGA1_c25520	0.60	-1.6
2,657,333	+		PGA1_c25520	0.61	-1.4
2,657,370	+		PGA1_c25520	0.64	-1.1
2,657,383	-		PGA1_c25520	0.66	-0.2
2,657,383	-		PGA1_c25520	0.66	-3.3
2,657,408	-		PGA1_c25520	0.68	+0.4
2,657,411	+		PGA1_c25520	0.68	+1.4
2,657,414	-		PGA1_c25520	0.69	+0.3
2,657,414	-		PGA1_c25520	0.69	-0.2
2,657,430	-		PGA1_c25520	0.70	-1.8
2,657,512	+		PGA1_c25520	0.78	-0.2
2,657,533	+		PGA1_c25520	0.80	-1.2
2,657,603	+		PGA1_c25520	0.87	-0.3
2,657,603	+		PGA1_c25520	0.87	+0.2
2,657,603	+		PGA1_c25520	0.87	+0.7
2,657,609	-		PGA1_c25520	0.88	-1.6
2,657,631	+				+1.8
2,657,638	+				-0.6
2,657,638	+				-1.5
2,657,643	+				-0.5
2,657,646	-				-0.2
2,657,646	-				-1.7
2,657,646	-				-0.2
2,657,646	-				+0.6
2,657,646	-				-0.5
2,657,651	-				-0.3
2,657,651	-				-0.1
2,657,653	+				+3.1
2,657,653	+				-0.9
2,657,683	+				+0.7
2,657,698	-				-0.7
2,657,701	+				+0.1
2,657,707	+				+0.4
2,657,736	-				-1.7
2,657,756	-		PGA1_c25530	0.11	-0.3
2,657,782	-		PGA1_c25530	0.13	-1.1
2,657,843	+		PGA1_c25530	0.19	-0.0
2,657,862	+		PGA1_c25530	0.20	-0.3
2,657,863	+		PGA1_c25530	0.21	-1.4
2,657,870	-		PGA1_c25530	0.21	-0.5
2,657,871	-		PGA1_c25530	0.21	-0.2
2,657,894	-		PGA1_c25530	0.23	-0.7
2,657,902	-		PGA1_c25530	0.24	-0.4
2,658,000	+		PGA1_c25530	0.33	-1.2
2,658,000	+		PGA1_c25530	0.33	+0.3
2,658,000	+		PGA1_c25530	0.33	+1.1
2,658,008	-		PGA1_c25530	0.34	-0.4
2,658,010	+		PGA1_c25530	0.34	-0.6
2,658,041	+		PGA1_c25530	0.37	-0.3
2,658,041	-		PGA1_c25530	0.37	-0.6
2,658,041	-		PGA1_c25530	0.37	+0.6
2,658,101	+		PGA1_c25530	0.42	-1.1
2,658,101	+		PGA1_c25530	0.42	-0.5
2,658,110	-		PGA1_c25530	0.43	-0.8
2,658,191	+		PGA1_c25530	0.51	+2.0
2,658,191	+		PGA1_c25530	0.51	+0.6
2,658,199	-		PGA1_c25530	0.51	-1.7
2,658,208	+		PGA1_c25530	0.52	+0.8
2,658,238	-		PGA1_c25530	0.55	-1.2
2,658,238	-		PGA1_c25530	0.55	+0.7
2,658,239	-		PGA1_c25530	0.55	-1.7
2,658,302	+		PGA1_c25530	0.61	-1.2
2,658,302	+		PGA1_c25530	0.61	-0.8
2,658,305	-		PGA1_c25530	0.61	-0.6
2,658,319	+		PGA1_c25530	0.63	+0.5
2,658,349	+		PGA1_c25530	0.65	+0.0
2,658,349	+		PGA1_c25530	0.65	-1.5
2,658,349	+		PGA1_c25530	0.65	+0.7
2,658,349	+		PGA1_c25530	0.65	-0.4
2,658,357	-		PGA1_c25530	0.66	-0.9
2,658,364	-		PGA1_c25530	0.67	-0.7
2,658,418	-		PGA1_c25530	0.72	-0.9
2,658,436	+		PGA1_c25530	0.73	-2.7
2,658,436	+		PGA1_c25530	0.73	-0.6
2,658,436	+		PGA1_c25530	0.73	+1.1
2,658,444	-		PGA1_c25530	0.74	-2.1
2,658,444	-		PGA1_c25530	0.74	-0.9
2,658,444	-		PGA1_c25530	0.74	-0.5
2,658,444	-		PGA1_c25530	0.74	-0.4
2,658,452	+		PGA1_c25530	0.75	+0.1
2,658,470	-		PGA1_c25530	0.76	-0.1
2,658,479	+		PGA1_c25530	0.77	-0.7
2,658,479	+		PGA1_c25530	0.77	-2.2
2,658,497	+		PGA1_c25530	0.79	-0.6
2,658,528	+		PGA1_c25530	0.82	-0.0
2,658,533	+		PGA1_c25530	0.82	-1.3
2,658,543	+		PGA1_c25530	0.83	+0.9
2,658,543	+		PGA1_c25530	0.83	-1.5
2,658,543	+		PGA1_c25530	0.83	-2.2
2,658,556	-		PGA1_c25530	0.84	+0.2
2,658,556	-		PGA1_c25530	0.84	-2.5
2,658,595	+		PGA1_c25530	0.88	-0.0
2,658,653	-				+1.0
2,658,654	+				-0.7
2,658,655	+				-0.5
2,658,655	+				-0.7
2,658,655	+				-0.3
2,658,663	-				+0.5
2,658,665	+				-0.4
2,658,675	+				-0.0
2,658,681	+				+1.1
2,658,696	+				-1.9
2,658,729	+				+0.2
2,658,739	-				-1.2
2,658,775	+				-0.8
2,658,819	+				-1.0
2,658,878	-				+0.5
2,658,879	-				-0.9
2,658,879	-				+0.0
2,658,888	-				+1.0
2,658,897	+				+0.7
2,658,905	-				-0.1
2,658,962	-				-0.7
2,658,976	+				-1.4
2,658,976	+				-1.6
2,659,051	+		PGA1_c25540	0.13	-0.7
2,659,092	-		PGA1_c25540	0.15	-0.2
2,659,093	-		PGA1_c25540	0.15	+0.4
2,659,103	+		PGA1_c25540	0.15	-0.8
2,659,103	-		PGA1_c25540	0.15	+0.1
2,659,103	-		PGA1_c25540	0.15	-0.7
2,659,103	-		PGA1_c25540	0.15	+0.2
2,659,103	-		PGA1_c25540	0.15	-0.7
2,659,128	+		PGA1_c25540	0.16	-1.5
2,659,161	-		PGA1_c25540	0.18	+0.9
2,659,179	+		PGA1_c25540	0.18	-0.2
2,659,187	-		PGA1_c25540	0.19	+0.4
2,659,187	-		PGA1_c25540	0.19	-0.1
2,659,187	-		PGA1_c25540	0.19	+1.0
2,659,221	+		PGA1_c25540	0.20	-0.0
2,659,229	-		PGA1_c25540	0.20	-1.2
2,659,231	+		PGA1_c25540	0.20	-0.5
2,659,234	-		PGA1_c25540	0.21	-0.6
2,659,234	-		PGA1_c25540	0.21	-1.5
2,659,246	-		PGA1_c25540	0.21	-0.8
2,659,322	-		PGA1_c25540	0.24	-0.4
2,659,329	+		PGA1_c25540	0.24	+0.4
2,659,394	-		PGA1_c25540	0.27	-1.8
2,659,452	-		PGA1_c25540	0.30	-0.4
2,659,452	-		PGA1_c25540	0.30	-0.8
2,659,519	+		PGA1_c25540	0.32	+1.3
2,659,520	-		PGA1_c25540	0.32	-1.1
2,659,523	+		PGA1_c25540	0.32	+0.4
2,659,526	-		PGA1_c25540	0.33	-0.2
2,659,526	-		PGA1_c25540	0.33	-0.9
2,659,526	-		PGA1_c25540	0.33	+1.1
2,659,531	-		PGA1_c25540	0.33	-1.0
2,659,541	-		PGA1_c25540	0.33	+1.7
2,659,580	+		PGA1_c25540	0.35	+0.1
2,659,580	+		PGA1_c25540	0.35	-1.1
2,659,580	+		PGA1_c25540	0.35	+0.6
2,659,607	+		PGA1_c25540	0.36	+0.8
2,659,607	+		PGA1_c25540	0.36	+0.5
2,659,612	+		PGA1_c25540	0.36	+0.9
2,659,612	+		PGA1_c25540	0.36	+0.5
2,659,620	-		PGA1_c25540	0.36	+0.3
2,659,620	-		PGA1_c25540	0.36	+0.9
2,659,620	-		PGA1_c25540	0.36	-0.1
2,659,620	-		PGA1_c25540	0.36	+1.6
2,659,675	+		PGA1_c25540	0.39	+1.0
2,659,704	+		PGA1_c25540	0.40	+0.4
2,659,712	+		PGA1_c25540	0.40	+0.0
2,659,712	+		PGA1_c25540	0.40	-2.3
2,659,720	-		PGA1_c25540	0.41	+0.7
2,659,720	-		PGA1_c25540	0.41	-0.5
2,659,722	+		PGA1_c25540	0.41	+0.0