Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02610

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02600 and PGA1_c02610 overlap by 4 nucleotidesPGA1_c02610 and PGA1_c02620 overlap by 1 nucleotidesPGA1_c02620 and PGA1_c02630 are separated by 43 nucleotides PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119 _c02600 PGA1_c02610: PGA1_c02610 - putative high-affinity branched-chain amino acid transport ATP-binding protein LivG, at 245,116 to 245,883 _c02610 PGA1_c02620: PGA1_c02620 - high-affinity branched-chain amino acid transport ATP-binding protein LivF, at 245,883 to 246,656 _c02620 PGA1_c02630: PGA1_c02630 - putative long-chain-fatty-acid-CoA ligase, at 246,700 to 248,637 _c02630 Position (kb) 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 244.164 kb on - strand, within PGA1_c02600at 244.164 kb on - strand, within PGA1_c02600at 244.181 kb on + strand, within PGA1_c02600at 244.181 kb on + strand, within PGA1_c02600at 244.181 kb on + strand, within PGA1_c02600at 244.181 kb on + strand, within PGA1_c02600at 244.181 kb on + strand, within PGA1_c02600at 244.189 kb on - strand, within PGA1_c02600at 244.211 kb on - strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.240 kb on + strand, within PGA1_c02600at 244.248 kb on - strand, within PGA1_c02600at 244.251 kb on + strand, within PGA1_c02600at 244.282 kb on + strand, within PGA1_c02600at 244.295 kb on - strand, within PGA1_c02600at 244.305 kb on - strand, within PGA1_c02600at 244.306 kb on + strand, within PGA1_c02600at 244.306 kb on + strand, within PGA1_c02600at 244.322 kb on - strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.398 kb on + strand, within PGA1_c02600at 244.401 kb on - strand, within PGA1_c02600at 244.406 kb on - strand, within PGA1_c02600at 244.406 kb on - strand, within PGA1_c02600at 244.406 kb on - strand, within PGA1_c02600at 244.406 kb on - strand, within PGA1_c02600at 244.406 kb on - strand, within PGA1_c02600at 244.419 kb on + strand, within PGA1_c02600at 244.465 kb on + strand, within PGA1_c02600at 244.465 kb on + strand, within PGA1_c02600at 244.473 kb on - strand, within PGA1_c02600at 244.473 kb on - strand, within PGA1_c02600at 244.513 kb on - strand, within PGA1_c02600at 244.544 kb on - strand, within PGA1_c02600at 244.567 kb on + strand, within PGA1_c02600at 244.577 kb on + strand, within PGA1_c02600at 244.577 kb on + strand, within PGA1_c02600at 244.577 kb on + strand, within PGA1_c02600at 244.619 kb on + strand, within PGA1_c02600at 244.657 kb on + strand, within PGA1_c02600at 244.688 kb on + strand, within PGA1_c02600at 244.725 kb on - strand, within PGA1_c02600at 244.733 kb on + strand, within PGA1_c02600at 244.737 kb on + strand, within PGA1_c02600at 244.737 kb on + strand, within PGA1_c02600at 244.737 kb on + strand, within PGA1_c02600at 244.784 kb on + strand, within PGA1_c02600at 244.803 kb on + strand, within PGA1_c02600at 244.816 kb on + strand, within PGA1_c02600at 244.913 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.919 kb on + strand, within PGA1_c02600at 244.924 kb on + strand, within PGA1_c02600at 244.924 kb on + strand, within PGA1_c02600at 244.927 kb on - strand, within PGA1_c02600at 244.982 kb on - strand, within PGA1_c02600at 244.982 kb on - strand, within PGA1_c02600at 245.040 kb on + strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.048 kb on - strandat 245.050 kb on + strandat 245.058 kb on - strandat 245.058 kb on - strandat 245.110 kb on + strandat 245.110 kb on + strandat 245.113 kb on + strandat 245.115 kb on + strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.118 kb on - strandat 245.124 kb on + strandat 245.127 kb on - strandat 245.132 kb on - strandat 245.205 kb on + strand, within PGA1_c02610at 245.208 kb on - strand, within PGA1_c02610at 245.213 kb on - strand, within PGA1_c02610at 245.227 kb on + strand, within PGA1_c02610at 245.230 kb on - strand, within PGA1_c02610at 245.289 kb on - strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.322 kb on + strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.330 kb on - strand, within PGA1_c02610at 245.373 kb on - strand, within PGA1_c02610at 245.398 kb on + strand, within PGA1_c02610at 245.429 kb on + strand, within PGA1_c02610at 245.448 kb on + strand, within PGA1_c02610at 245.535 kb on + strand, within PGA1_c02610at 245.549 kb on - strand, within PGA1_c02610at 245.560 kb on - strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.571 kb on + strand, within PGA1_c02610at 245.579 kb on - strand, within PGA1_c02610at 245.579 kb on - strand, within PGA1_c02610at 245.581 kb on - strand, within PGA1_c02610at 245.613 kb on + strand, within PGA1_c02610at 245.646 kb on + strand, within PGA1_c02610at 245.737 kb on + strand, within PGA1_c02610at 245.760 kb on - strand, within PGA1_c02610at 245.790 kb on + strand, within PGA1_c02610at 245.835 kb on + strandat 245.835 kb on + strandat 245.835 kb on + strandat 245.843 kb on - strandat 245.882 kb on + strandat 245.886 kb on + strandat 245.902 kb on - strandat 245.937 kb on - strandat 245.937 kb on - strandat 245.964 kb on + strand, within PGA1_c02620at 245.964 kb on + strand, within PGA1_c02620at 245.964 kb on + strand, within PGA1_c02620at 245.972 kb on - strand, within PGA1_c02620at 245.978 kb on + strand, within PGA1_c02620at 246.013 kb on + strand, within PGA1_c02620at 246.033 kb on + strand, within PGA1_c02620at 246.086 kb on + strand, within PGA1_c02620at 246.107 kb on - strand, within PGA1_c02620at 246.137 kb on - strand, within PGA1_c02620at 246.169 kb on + strand, within PGA1_c02620at 246.172 kb on - strand, within PGA1_c02620at 246.181 kb on + strand, within PGA1_c02620at 246.181 kb on + strand, within PGA1_c02620at 246.195 kb on + strand, within PGA1_c02620at 246.203 kb on - strand, within PGA1_c02620at 246.229 kb on - strand, within PGA1_c02620at 246.229 kb on - strand, within PGA1_c02620at 246.295 kb on - strand, within PGA1_c02620at 246.379 kb on + strand, within PGA1_c02620at 246.380 kb on - strand, within PGA1_c02620at 246.381 kb on - strand, within PGA1_c02620at 246.387 kb on - strand, within PGA1_c02620at 246.387 kb on - strand, within PGA1_c02620at 246.447 kb on + strand, within PGA1_c02620at 246.465 kb on + strand, within PGA1_c02620at 246.497 kb on + strand, within PGA1_c02620at 246.511 kb on - strand, within PGA1_c02620at 246.609 kb on + strandat 246.609 kb on + strandat 246.609 kb on + strandat 246.617 kb on - strandat 246.617 kb on - strandat 246.617 kb on - strandat 246.655 kb on + strandat 246.663 kb on - strandat 246.699 kb on + strandat 246.710 kb on + strandat 246.712 kb on - strandat 246.718 kb on - strandat 246.718 kb on - strandat 246.727 kb on - strandat 246.751 kb on - strandat 246.774 kb on + strandat 246.782 kb on - strandat 246.836 kb on - strandat 246.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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244,164 - PGA1_c02600 0.12 +0.5
244,164 - PGA1_c02600 0.12 +0.2
244,181 + PGA1_c02600 0.14 -1.0
244,181 + PGA1_c02600 0.14 +0.5
244,181 + PGA1_c02600 0.14 -0.0
244,181 + PGA1_c02600 0.14 -0.3
244,181 + PGA1_c02600 0.14 +0.3
244,189 - PGA1_c02600 0.14 +1.4
244,211 - PGA1_c02600 0.16 +0.4
244,240 + PGA1_c02600 0.19 -0.1
244,240 + PGA1_c02600 0.19 -2.3
244,240 + PGA1_c02600 0.19 +0.8
244,240 + PGA1_c02600 0.19 -0.6
244,240 + PGA1_c02600 0.19 -1.0
244,240 + PGA1_c02600 0.19 -1.9
244,248 - PGA1_c02600 0.20 -0.9
244,251 + PGA1_c02600 0.20 -0.3
244,282 + PGA1_c02600 0.23 +0.3
244,295 - PGA1_c02600 0.24 +0.4
244,305 - PGA1_c02600 0.25 -0.6
244,306 + PGA1_c02600 0.25 +1.7
244,306 + PGA1_c02600 0.25 -0.3
244,322 - PGA1_c02600 0.27 -1.6
244,398 + PGA1_c02600 0.34 +0.1
244,398 + PGA1_c02600 0.34 -1.7
244,398 + PGA1_c02600 0.34 +0.0
244,398 + PGA1_c02600 0.34 +1.0
244,398 + PGA1_c02600 0.34 -0.3
244,398 + PGA1_c02600 0.34 -1.5
244,398 + PGA1_c02600 0.34 +0.5
244,398 + PGA1_c02600 0.34 +0.7
244,398 + PGA1_c02600 0.34 +1.0
244,398 + PGA1_c02600 0.34 -1.3
244,398 + PGA1_c02600 0.34 +0.4
244,398 + PGA1_c02600 0.34 -1.0
244,398 + PGA1_c02600 0.34 +0.5
244,398 + PGA1_c02600 0.34 +0.5
244,398 + PGA1_c02600 0.34 -0.9
244,401 - PGA1_c02600 0.34 +0.9
244,406 - PGA1_c02600 0.34 -2.3
244,406 - PGA1_c02600 0.34 +0.0
244,406 - PGA1_c02600 0.34 -0.3
244,406 - PGA1_c02600 0.34 +0.8
244,406 - PGA1_c02600 0.34 +0.3
244,419 + PGA1_c02600 0.35 +0.1
244,465 + PGA1_c02600 0.40 +0.1
244,465 + PGA1_c02600 0.40 -0.7
244,473 - PGA1_c02600 0.40 -1.9
244,473 - PGA1_c02600 0.40 -1.0
244,513 - PGA1_c02600 0.44 +0.1
244,544 - PGA1_c02600 0.47 +0.4
244,567 + PGA1_c02600 0.49 -0.3
244,577 + PGA1_c02600 0.50 +1.1
244,577 + PGA1_c02600 0.50 +0.1
244,577 + PGA1_c02600 0.50 +1.1
244,619 + PGA1_c02600 0.54 +0.1
244,657 + PGA1_c02600 0.57 +1.3
244,688 + PGA1_c02600 0.60 -0.7
244,725 - PGA1_c02600 0.64 +0.8
244,733 + PGA1_c02600 0.64 -0.4
244,737 + PGA1_c02600 0.65 -0.5
244,737 + PGA1_c02600 0.65 -1.3
244,737 + PGA1_c02600 0.65 -0.2
244,784 + PGA1_c02600 0.69 -0.9
244,803 + PGA1_c02600 0.71 -1.0
244,816 + PGA1_c02600 0.72 -2.5
244,913 + PGA1_c02600 0.81 +1.1
244,919 + PGA1_c02600 0.81 +0.5
244,919 + PGA1_c02600 0.81 +2.5
244,919 + PGA1_c02600 0.81 +2.4
244,924 + PGA1_c02600 0.82 +0.2
244,924 + PGA1_c02600 0.82 -0.5
244,927 - PGA1_c02600 0.82 -0.7
244,982 - PGA1_c02600 0.87 -0.3
244,982 - PGA1_c02600 0.87 +0.7
245,040 + -0.5
245,048 - -0.0
245,048 - -0.5
245,048 - -0.9
245,048 - +0.5
245,050 + +0.3
245,058 - -2.2
245,058 - +0.2
245,110 + +1.0
245,110 + +0.5
245,113 + -1.2
245,115 + +0.3
245,118 - -1.5
245,118 - -0.9
245,118 - -1.7
245,118 - +0.9
245,118 - +0.2
245,124 + +1.2
245,127 - +0.9
245,132 - +0.9
245,205 + PGA1_c02610 0.12 -0.3
245,208 - PGA1_c02610 0.12 -1.2
245,213 - PGA1_c02610 0.13 -0.5
245,227 + PGA1_c02610 0.14 -0.0
245,230 - PGA1_c02610 0.15 -1.8
245,289 - PGA1_c02610 0.23 -2.4
245,322 + PGA1_c02610 0.27 +0.1
245,322 + PGA1_c02610 0.27 -0.5
245,322 + PGA1_c02610 0.27 +1.0
245,322 + PGA1_c02610 0.27 -0.2
245,330 - PGA1_c02610 0.28 -1.0
245,330 - PGA1_c02610 0.28 +0.7
245,330 - PGA1_c02610 0.28 -0.6
245,373 - PGA1_c02610 0.33 -1.6
245,398 + PGA1_c02610 0.37 -0.6
245,429 + PGA1_c02610 0.41 -0.1
245,448 + PGA1_c02610 0.43 -1.3
245,535 + PGA1_c02610 0.55 -2.0
245,549 - PGA1_c02610 0.56 +0.9
245,560 - PGA1_c02610 0.58 -0.3
245,571 + PGA1_c02610 0.59 -0.4
245,571 + PGA1_c02610 0.59 +0.6
245,571 + PGA1_c02610 0.59 -0.5
245,579 - PGA1_c02610 0.60 -1.2
245,579 - PGA1_c02610 0.60 -0.2
245,581 - PGA1_c02610 0.61 -0.7
245,613 + PGA1_c02610 0.65 -0.4
245,646 + PGA1_c02610 0.69 +0.4
245,737 + PGA1_c02610 0.81 +0.7
245,760 - PGA1_c02610 0.84 +0.0
245,790 + PGA1_c02610 0.88 -1.6
245,835 + +1.1
245,835 + +0.3
245,835 + -1.6
245,843 - -1.2
245,882 + +0.7
245,886 + -0.9
245,902 - -2.3
245,937 - -0.4
245,937 - +1.7
245,964 + PGA1_c02620 0.10 -3.1
245,964 + PGA1_c02620 0.10 +0.8
245,964 + PGA1_c02620 0.10 -1.0
245,972 - PGA1_c02620 0.11 +0.1
245,978 + PGA1_c02620 0.12 +1.0
246,013 + PGA1_c02620 0.17 -1.0
246,033 + PGA1_c02620 0.19 +1.5
246,086 + PGA1_c02620 0.26 +0.1
246,107 - PGA1_c02620 0.29 +1.2
246,137 - PGA1_c02620 0.33 -0.6
246,169 + PGA1_c02620 0.37 -0.2
246,172 - PGA1_c02620 0.37 -0.6
246,181 + PGA1_c02620 0.39 +0.1
246,181 + PGA1_c02620 0.39 +0.3
246,195 + PGA1_c02620 0.40 -0.2
246,203 - PGA1_c02620 0.41 +0.8
246,229 - PGA1_c02620 0.45 +1.2
246,229 - PGA1_c02620 0.45 +0.4
246,295 - PGA1_c02620 0.53 +0.4
246,379 + PGA1_c02620 0.64 +2.8
246,380 - PGA1_c02620 0.64 -0.5
246,381 - PGA1_c02620 0.64 -0.0
246,387 - PGA1_c02620 0.65 +1.5
246,387 - PGA1_c02620 0.65 +1.4
246,447 + PGA1_c02620 0.73 +1.1
246,465 + PGA1_c02620 0.75 -1.8
246,497 + PGA1_c02620 0.79 -1.0
246,511 - PGA1_c02620 0.81 +0.4
246,609 + +0.4
246,609 + +1.5
246,609 + -1.1
246,617 - -0.0
246,617 - +1.9
246,617 - +0.4
246,655 + +0.7
246,663 - +0.6
246,699 + +0.1
246,710 + -0.3
246,712 - -0.1
246,718 - +0.8
246,718 - +0.5
246,727 - +0.0
246,751 - +0.6
246,774 + +1.2
246,782 - +0.4
246,836 - -1.1
246,861 + -1.2

Or see this region's nucleotide sequence