Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25020 and PGA1_c25030 are separated by 91 nucleotides PGA1_c25030 and PGA1_c25040 are separated by 102 nucleotides PGA1_c25040 and PGA1_c25050 are separated by 215 nucleotides
PGA1_c25020: PGA1_c25020 - putative transcriptional regulator, LysR family, at 2,606,311 to 2,607,186
_c25020
PGA1_c25030: PGA1_c25030 - hypothetical protein, at 2,607,278 to 2,607,712
_c25030
PGA1_c25040: PGA1_c25040 - alpha/beta hydrolase domain-containing protein, at 2,607,815 to 2,608,672
_c25040
PGA1_c25050: PGA1_c25050 - ribose-phosphate pyrophosphokinase Prs, at 2,608,888 to 2,609,907
_c25050
Position (kb)
2607
2608
2609 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2606.857 kb on - strand, within PGA1_c25020 at 2606.862 kb on - strand, within PGA1_c25020 at 2606.863 kb on - strand, within PGA1_c25020 at 2606.865 kb on + strand, within PGA1_c25020 at 2606.895 kb on - strand, within PGA1_c25020 at 2606.900 kb on + strand, within PGA1_c25020 at 2606.933 kb on - strand, within PGA1_c25020 at 2606.979 kb on + strand, within PGA1_c25020 at 2606.983 kb on - strand, within PGA1_c25020 at 2606.988 kb on - strand, within PGA1_c25020 at 2607.016 kb on + strand, within PGA1_c25020 at 2607.017 kb on - strand, within PGA1_c25020 at 2607.134 kb on + strand at 2607.134 kb on + strand at 2607.171 kb on + strand at 2607.268 kb on + strand at 2607.269 kb on - strand at 2607.271 kb on - strand at 2607.377 kb on - strand, within PGA1_c25030 at 2607.450 kb on + strand, within PGA1_c25030 at 2607.458 kb on - strand, within PGA1_c25030 at 2607.458 kb on - strand, within PGA1_c25030 at 2607.504 kb on + strand, within PGA1_c25030 at 2607.557 kb on - strand, within PGA1_c25030 at 2607.582 kb on + strand, within PGA1_c25030 at 2607.593 kb on + strand, within PGA1_c25030 at 2607.616 kb on - strand, within PGA1_c25030 at 2607.636 kb on + strand, within PGA1_c25030 at 2607.636 kb on + strand, within PGA1_c25030 at 2607.702 kb on + strand at 2607.772 kb on - strand at 2608.059 kb on + strand, within PGA1_c25040 at 2608.064 kb on + strand, within PGA1_c25040 at 2608.067 kb on - strand, within PGA1_c25040 at 2608.079 kb on + strand, within PGA1_c25040 at 2608.158 kb on + strand, within PGA1_c25040 at 2608.210 kb on - strand, within PGA1_c25040 at 2608.212 kb on + strand, within PGA1_c25040 at 2608.230 kb on - strand, within PGA1_c25040 at 2608.316 kb on - strand, within PGA1_c25040 at 2608.325 kb on + strand, within PGA1_c25040 at 2608.325 kb on + strand, within PGA1_c25040 at 2608.325 kb on + strand, within PGA1_c25040 at 2608.330 kb on + strand, within PGA1_c25040 at 2608.333 kb on - strand, within PGA1_c25040 at 2608.333 kb on - strand, within PGA1_c25040 at 2608.340 kb on + strand, within PGA1_c25040 at 2608.340 kb on + strand, within PGA1_c25040 at 2608.348 kb on - strand, within PGA1_c25040 at 2608.423 kb on - strand, within PGA1_c25040 at 2608.463 kb on + strand, within PGA1_c25040 at 2608.517 kb on + strand, within PGA1_c25040 at 2608.600 kb on + strand at 2608.703 kb on + strand at 2608.703 kb on + strand at 2608.703 kb on + strand at 2608.711 kb on - strand at 2608.711 kb on - strand at 2608.744 kb on - strand at 2608.758 kb on - strand at 2608.760 kb on + strand at 2608.760 kb on + strand at 2608.768 kb on - strand at 2608.776 kb on + strand at 2608.776 kb on + strand at 2608.784 kb on - strand at 2608.784 kb on - strand at 2608.784 kb on - strand at 2608.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 2,606,857 - PGA1_c25020 0.62 -0.2 2,606,862 - PGA1_c25020 0.63 -1.5 2,606,863 - PGA1_c25020 0.63 -0.3 2,606,865 + PGA1_c25020 0.63 -1.7 2,606,895 - PGA1_c25020 0.67 +0.8 2,606,900 + PGA1_c25020 0.67 +1.4 2,606,933 - PGA1_c25020 0.71 -1.9 2,606,979 + PGA1_c25020 0.76 +1.0 2,606,983 - PGA1_c25020 0.77 -1.1 2,606,988 - PGA1_c25020 0.77 +0.1 2,607,016 + PGA1_c25020 0.80 +0.3 2,607,017 - PGA1_c25020 0.81 -2.4 2,607,134 + +0.5 2,607,134 + +0.1 2,607,171 + +0.7 2,607,268 + +0.9 2,607,269 - -0.1 2,607,271 - +0.4 2,607,377 - PGA1_c25030 0.23 -1.4 2,607,450 + PGA1_c25030 0.40 -0.1 2,607,458 - PGA1_c25030 0.41 +0.4 2,607,458 - PGA1_c25030 0.41 -0.7 2,607,504 + PGA1_c25030 0.52 -1.2 2,607,557 - PGA1_c25030 0.64 -1.1 2,607,582 + PGA1_c25030 0.70 +0.8 2,607,593 + PGA1_c25030 0.72 -0.2 2,607,616 - PGA1_c25030 0.78 -0.5 2,607,636 + PGA1_c25030 0.82 -2.4 2,607,636 + PGA1_c25030 0.82 -0.6 2,607,702 + -1.2 2,607,772 - -0.1 2,608,059 + PGA1_c25040 0.28 +0.8 2,608,064 + PGA1_c25040 0.29 -2.4 2,608,067 - PGA1_c25040 0.29 -1.6 2,608,079 + PGA1_c25040 0.31 -0.7 2,608,158 + PGA1_c25040 0.40 +0.8 2,608,210 - PGA1_c25040 0.46 -1.8 2,608,212 + PGA1_c25040 0.46 -0.0 2,608,230 - PGA1_c25040 0.48 +0.3 2,608,316 - PGA1_c25040 0.58 +0.4 2,608,325 + PGA1_c25040 0.59 -0.8 2,608,325 + PGA1_c25040 0.59 -1.5 2,608,325 + PGA1_c25040 0.59 -1.4 2,608,330 + PGA1_c25040 0.60 +0.5 2,608,333 - PGA1_c25040 0.60 +0.4 2,608,333 - PGA1_c25040 0.60 -0.5 2,608,340 + PGA1_c25040 0.61 -2.0 2,608,340 + PGA1_c25040 0.61 -2.6 2,608,348 - PGA1_c25040 0.62 +1.6 2,608,423 - PGA1_c25040 0.71 -2.1 2,608,463 + PGA1_c25040 0.76 -0.4 2,608,517 + PGA1_c25040 0.82 -0.6 2,608,600 + +0.9 2,608,703 + -0.1 2,608,703 + -0.3 2,608,703 + -1.2 2,608,711 - +0.4 2,608,711 - -1.4 2,608,744 - -1.0 2,608,758 - +0.4 2,608,760 + +1.5 2,608,760 + -3.0 2,608,768 - -1.7 2,608,776 + -0.9 2,608,776 + -2.4 2,608,784 - +1.1 2,608,784 - -2.8 2,608,784 - +0.4 2,608,786 + -1.5
Or see this region's nucleotide sequence