Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19360

Experiment: Carbon source L-Ornithine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source L-Ornithine 5 mM
2,013,280	+		PGA1_c19350	0.31	-1.3
2,013,287	+		PGA1_c19350	0.32	+0.1
2,013,320	+		PGA1_c19350	0.34	+0.6
2,013,320	+		PGA1_c19350	0.34	-0.3
2,013,338	+		PGA1_c19350	0.36	+1.5
2,013,343	+		PGA1_c19350	0.36	+0.1
2,013,348	+		PGA1_c19350	0.36	-1.7
2,013,368	+		PGA1_c19350	0.38	+0.2
2,013,376	-		PGA1_c19350	0.38	+0.7
2,013,438	+		PGA1_c19350	0.43	-1.6
2,013,535	+		PGA1_c19350	0.50	+0.6
2,013,551	+		PGA1_c19350	0.51	+0.3
2,013,589	-		PGA1_c19350	0.53	-1.2
2,013,638	-		PGA1_c19350	0.57	+0.1
2,013,638	-		PGA1_c19350	0.57	+0.4
2,013,741	+		PGA1_c19350	0.64	+0.0
2,013,758	+		PGA1_c19350	0.65	+0.5
2,013,766	-		PGA1_c19350	0.66	+1.3
2,013,828	-		PGA1_c19350	0.70	+1.2
2,013,830	+		PGA1_c19350	0.70	+0.5
2,013,858	+		PGA1_c19350	0.72	-1.5
2,013,874	-		PGA1_c19350	0.74	-0.1
2,013,885	+		PGA1_c19350	0.74	-0.5
2,013,892	-		PGA1_c19350	0.75	-1.5
2,013,907	+		PGA1_c19350	0.76	-0.5
2,013,915	-		PGA1_c19350	0.77	-1.8
2,013,915	-		PGA1_c19350	0.77	-0.2
2,013,946	+		PGA1_c19350	0.79	+0.4
2,013,951	+		PGA1_c19350	0.79	+0.1
2,013,996	+		PGA1_c19350	0.82	-0.8
2,013,996	+		PGA1_c19350	0.82	-0.0
2,014,009	+		PGA1_c19350	0.83	-0.0
2,014,085	+		PGA1_c19350	0.89	+0.8
2,014,086	-		PGA1_c19350	0.89	+0.5
2,014,087	+		PGA1_c19350	0.89	-0.4
2,014,100	+		PGA1_c19350	0.90	-0.1
2,014,171	+				-1.3
2,014,179	-				+0.4
2,014,201	+				-0.2
2,014,201	+				+1.2
2,014,226	+				+1.0
2,014,285	+				+0.3
2,014,336	+				+0.5
2,014,344	-				+0.3
2,014,344	-				+0.2
2,014,354	-				-0.5
2,014,447	+		PGA1_c19360	0.11	+1.1
2,014,508	-		PGA1_c19360	0.15	-0.8
2,014,659	+		PGA1_c19360	0.23	-0.3
2,014,676	-		PGA1_c19360	0.24	+0.5
2,014,685	-		PGA1_c19360	0.24	+1.4
2,014,687	+		PGA1_c19360	0.24	-1.3
2,014,687	+		PGA1_c19360	0.24	-0.5
2,014,687	+		PGA1_c19360	0.24	+0.4
2,014,734	-		PGA1_c19360	0.27	+0.1
2,014,745	+		PGA1_c19360	0.28	+0.2
2,014,747	-		PGA1_c19360	0.28	-0.0
2,014,749	+		PGA1_c19360	0.28	-1.5
2,014,750	+		PGA1_c19360	0.28	-1.7
2,014,753	-		PGA1_c19360	0.28	+0.1
2,014,753	-		PGA1_c19360	0.28	+0.2
2,014,760	+		PGA1_c19360	0.29	+0.2
2,014,763	-		PGA1_c19360	0.29	+0.0
2,014,807	+		PGA1_c19360	0.31	+1.4
2,014,829	+		PGA1_c19360	0.32	+2.0
2,014,837	-		PGA1_c19360	0.33	-0.3
2,014,837	-		PGA1_c19360	0.33	+0.9
2,014,837	-		PGA1_c19360	0.33	+1.1
2,014,837	-		PGA1_c19360	0.33	+0.9
2,014,839	-		PGA1_c19360	0.33	-3.2
2,014,941	+		PGA1_c19360	0.39	-1.2
2,014,941	+		PGA1_c19360	0.39	+0.6
2,014,941	+		PGA1_c19360	0.39	-0.5
2,014,946	+		PGA1_c19360	0.39	+0.6
2,014,954	-		PGA1_c19360	0.39	-0.3
2,014,954	-		PGA1_c19360	0.39	-0.2
2,014,978	+		PGA1_c19360	0.41	-1.9
2,014,986	-		PGA1_c19360	0.41	-0.6
2,015,016	+		PGA1_c19360	0.43	-0.1
2,015,017	-		PGA1_c19360	0.43	+0.5
2,015,042	+		PGA1_c19360	0.44	-0.0
2,015,050	-		PGA1_c19360	0.45	+0.4
2,015,076	-		PGA1_c19360	0.46	-3.0
2,015,078	+		PGA1_c19360	0.46	-0.6
2,015,081	-		PGA1_c19360	0.46	+0.4
2,015,082	+		PGA1_c19360	0.46	+0.5
2,015,082	+		PGA1_c19360	0.46	+0.4
2,015,082	+		PGA1_c19360	0.46	+0.3
2,015,090	-		PGA1_c19360	0.47	-0.2
2,015,090	-		PGA1_c19360	0.47	-0.0
2,015,090	-		PGA1_c19360	0.47	-2.0
2,015,090	-		PGA1_c19360	0.47	-0.6
2,015,101	+		PGA1_c19360	0.47	+0.6
2,015,129	+		PGA1_c19360	0.49	+0.5
2,015,170	-		PGA1_c19360	0.51	+1.9
2,015,171	-		PGA1_c19360	0.51	-0.1
2,015,177	+		PGA1_c19360	0.52	+0.9
2,015,191	-		PGA1_c19360	0.52	+0.5
2,015,274	+		PGA1_c19360	0.57	-0.0
2,015,318	+		PGA1_c19360	0.59	+0.1
2,015,318	-		PGA1_c19360	0.59	-0.0
2,015,323	+		PGA1_c19360	0.60	+1.1
2,015,323	+		PGA1_c19360	0.60	-1.7
2,015,326	-		PGA1_c19360	0.60	-0.1
2,015,331	-		PGA1_c19360	0.60	-0.0
2,015,362	-		PGA1_c19360	0.62	+0.4
2,015,410	+		PGA1_c19360	0.65	+1.8
2,015,471	-		PGA1_c19360	0.68	-1.2
2,015,499	+		PGA1_c19360	0.69	-0.2
2,015,501	-		PGA1_c19360	0.70	+2.5
2,015,520	+		PGA1_c19360	0.71	+0.3
2,015,545	-		PGA1_c19360	0.72	-0.4
2,015,548	+		PGA1_c19360	0.72	-0.8
2,015,556	-		PGA1_c19360	0.73	-0.4
2,015,592	-		PGA1_c19360	0.75	+1.4
2,015,634	+		PGA1_c19360	0.77	-0.0
2,015,637	+		PGA1_c19360	0.77	+0.6
2,015,637	+		PGA1_c19360	0.77	+0.3
2,015,637	+		PGA1_c19360	0.77	+0.2
2,015,639	+		PGA1_c19360	0.77	+3.1
2,015,645	-		PGA1_c19360	0.78	+0.7
2,015,684	-		PGA1_c19360	0.80	+0.4
2,015,735	+		PGA1_c19360	0.83	-0.3
2,015,735	-		PGA1_c19360	0.83	+1.4
2,015,743	-		PGA1_c19360	0.83	+2.1
2,015,755	+		PGA1_c19360	0.84	+0.5
2,015,773	-		PGA1_c19360	0.85	+0.9
2,015,807	-		PGA1_c19360	0.86	-1.8
2,015,812	+		PGA1_c19360	0.87	+0.9
2,015,841	-		PGA1_c19360	0.88	+0.9
2,015,858	+		PGA1_c19360	0.89	-0.5
2,015,858	+		PGA1_c19360	0.89	-0.1
2,015,858	+		PGA1_c19360	0.89	+1.3
2,015,858	+		PGA1_c19360	0.89	+0.3
2,015,861	-		PGA1_c19360	0.89	-0.9
2,015,866	-		PGA1_c19360	0.90	+1.4
2,015,866	-		PGA1_c19360	0.90	-0.3
2,015,866	-		PGA1_c19360	0.90	-1.0
2,015,866	-		PGA1_c19360	0.90	+0.9
2,015,866	-		PGA1_c19360	0.90	-0.6
2,015,866	-		PGA1_c19360	0.90	-0.9
2,015,871	+				+0.2
2,015,903	+				+0.3
2,015,946	+				+0.2
2,015,946	+				-2.6
2,015,946	+				+1.5
2,015,998	-				-1.0
2,016,016	+				-1.0
2,016,027	+				+0.4
2,016,027	+				+0.2
2,016,035	-				-0.2
2,016,035	-				+0.7
2,016,053	+				+1.3
2,016,053	+				-0.9
2,016,053	+				+0.7
2,016,053	+				-0.9
2,016,058	+				-0.6
2,016,065	+				-0.9
2,016,066	-				-1.7
2,016,071	-				+0.9
2,016,072	+				+1.3
2,016,080	-				-0.1
2,016,115	+				-1.7
2,016,174	+		PGA1_c19370	0.15	-1.8
2,016,174	+		PGA1_c19370	0.15	+0.7
2,016,176	+		PGA1_c19370	0.15	+0.6
2,016,184	-		PGA1_c19370	0.16	+0.7
2,016,267	-		PGA1_c19370	0.27	+1.1
2,016,308	+		PGA1_c19370	0.32	+0.8
2,016,308	+		PGA1_c19370	0.32	+0.5
2,016,323	+		PGA1_c19370	0.34	+0.4
2,016,331	-		PGA1_c19370	0.35	-0.2
2,016,331	-		PGA1_c19370	0.35	-0.1
2,016,340	+		PGA1_c19370	0.36	+0.6
2,016,340	+		PGA1_c19370	0.36	-0.0
2,016,340	+		PGA1_c19370	0.36	+1.1
2,016,348	-		PGA1_c19370	0.37	+1.2
2,016,428	+		PGA1_c19370	0.48	-0.3
2,016,442	+		PGA1_c19370	0.50	+1.1
2,016,497	-		PGA1_c19370	0.57	+1.1
2,016,507	-		PGA1_c19370	0.58	+0.1
2,016,519	+		PGA1_c19370	0.60	-2.6
2,016,576	+		PGA1_c19370	0.67	-0.1
2,016,589	+		PGA1_c19370	0.69	+0.7
2,016,597	-		PGA1_c19370	0.70	+1.1
2,016,597	-		PGA1_c19370	0.70	-0.5
2,016,607	+		PGA1_c19370	0.71	-0.3
2,016,607	+		PGA1_c19370	0.71	+0.3
2,016,642	-		PGA1_c19370	0.76	+0.9
2,016,700	+		PGA1_c19370	0.83	-1.2
2,016,748	+		PGA1_c19370	0.90	+0.8
2,016,840	-				-0.2
2,016,861	+				+2.0
2,016,866	+				-0.5
2,016,869	-				-1.5
2,016,871	+				+1.2
2,016,884	+				+0.7
2,016,930	+				-1.7
2,016,930	+				+1.3
2,016,937	+				-0.2
2,016,938	-				+1.8
2,016,938	-				-0.7
2,016,938	-				+1.3
2,016,938	-				+1.3
2,016,938	-				+1.1
2,016,938	-				-1.3
2,016,938	-				+0.0
2,016,938	-				+0.0
2,016,955	-				+1.7
2,016,978	-		PGA1_c19380	0.11	-1.0
2,016,979	+		PGA1_c19380	0.12	-0.0
2,016,979	+		PGA1_c19380	0.12	-1.5
2,016,979	+		PGA1_c19380	0.12	+0.2
2,016,980	-		PGA1_c19380	0.12	-1.1
2,016,983	-		PGA1_c19380	0.12	+0.3
2,016,987	-		PGA1_c19380	0.13	-1.0
2,016,987	-		PGA1_c19380	0.13	+0.5
2,016,987	-		PGA1_c19380	0.13	-0.9
2,016,987	-		PGA1_c19380	0.13	+0.9
2,016,998	-		PGA1_c19380	0.15	+0.1
2,016,999	+		PGA1_c19380	0.15	-0.1
2,016,999	+		PGA1_c19380	0.15	-2.0
2,017,007	-		PGA1_c19380	0.16	-2.0
2,017,007	-		PGA1_c19380	0.16	-0.2
2,017,007	-		PGA1_c19380	0.16	+0.4
2,017,007	-		PGA1_c19380	0.16	+0.3
2,017,009	-		PGA1_c19380	0.16	-1.5
2,017,009	-		PGA1_c19380	0.16	+1.8
2,017,009	-		PGA1_c19380	0.16	+1.0
2,017,017	-		PGA1_c19380	0.18	+0.3
2,017,045	+		PGA1_c19380	0.22	+0.2