Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01820 and PGA1_c01830 are separated by 147 nucleotides PGA1_c01830 and PGA1_c01840 are separated by 593 nucleotides PGA1_c01840 and PGA1_c01850 are separated by 290 nucleotides PGA1_c01850 and PGA1_c01860 are separated by 110 nucleotides
PGA1_c01820: PGA1_c01820 - Predicted permeases, at 166,389 to 167,333
_c01820
PGA1_c01830: PGA1_c01830 - Uncharacterized conserved small protein, at 167,481 to 167,696
_c01830
PGA1_c01840: PGA1_c01840 - transmembrane ion channel-domain containing protein, at 168,290 to 168,802
_c01840
PGA1_c01850: PGA1_c01850 - 50S ribosomal protein L15, at 169,093 to 169,563
_c01850
PGA1_c01860: PGA1_c01860 - preprotein translocase SecY, at 169,674 to 171,038
_c01860
Position (kb) 168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.301 kb on + strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.309 kb on - strand at 167.319 kb on - strand at 167.353 kb on - strand at 167.366 kb on + strand at 167.366 kb on + strand at 167.471 kb on + strand at 167.487 kb on - strand at 167.528 kb on - strand, within PGA1_c01830 at 167.558 kb on + strand, within PGA1_c01830 at 167.593 kb on - strand, within PGA1_c01830 at 167.596 kb on + strand, within PGA1_c01830 at 167.623 kb on - strand, within PGA1_c01830 at 167.744 kb on + strand at 167.910 kb on + strand at 167.929 kb on + strand at 167.942 kb on - strand at 167.952 kb on + strand at 167.960 kb on - strand at 167.960 kb on - strand at 167.960 kb on - strand at 168.018 kb on - strand at 168.042 kb on + strand at 168.048 kb on + strand at 168.048 kb on + strand at 168.089 kb on - strand at 168.089 kb on - strand at 168.113 kb on + strand at 168.113 kb on + strand at 168.113 kb on + strand at 168.115 kb on + strand at 168.121 kb on - strand at 168.123 kb on - strand at 168.138 kb on - strand at 168.219 kb on + strand at 168.272 kb on + strand at 168.376 kb on - strand, within PGA1_c01840 at 168.430 kb on + strand, within PGA1_c01840 at 168.435 kb on + strand, within PGA1_c01840 at 168.435 kb on + strand, within PGA1_c01840 at 168.443 kb on - strand, within PGA1_c01840 at 168.452 kb on + strand, within PGA1_c01840 at 168.482 kb on + strand, within PGA1_c01840 at 168.482 kb on + strand, within PGA1_c01840 at 168.490 kb on - strand, within PGA1_c01840 at 168.491 kb on + strand, within PGA1_c01840 at 168.497 kb on + strand, within PGA1_c01840 at 168.499 kb on - strand, within PGA1_c01840 at 168.499 kb on - strand, within PGA1_c01840 at 168.505 kb on - strand, within PGA1_c01840 at 168.511 kb on + strand, within PGA1_c01840 at 168.519 kb on - strand, within PGA1_c01840 at 168.519 kb on - strand, within PGA1_c01840 at 168.543 kb on + strand, within PGA1_c01840 at 168.543 kb on + strand, within PGA1_c01840 at 168.548 kb on + strand, within PGA1_c01840 at 168.548 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.551 kb on - strand, within PGA1_c01840 at 168.607 kb on + strand, within PGA1_c01840 at 168.619 kb on + strand, within PGA1_c01840 at 168.626 kb on - strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.664 kb on + strand, within PGA1_c01840 at 168.672 kb on - strand, within PGA1_c01840 at 168.672 kb on - strand, within PGA1_c01840 at 168.688 kb on + strand, within PGA1_c01840 at 168.708 kb on + strand, within PGA1_c01840 at 168.747 kb on - strand, within PGA1_c01840 at 168.747 kb on - strand, within PGA1_c01840 at 168.752 kb on - strand at 168.754 kb on + strand at 168.762 kb on - strand at 168.786 kb on - strand at 168.880 kb on + strand at 168.888 kb on - strand at 168.894 kb on + strand at 168.894 kb on + strand at 168.901 kb on - strand at 168.917 kb on + strand at 168.917 kb on + strand at 168.925 kb on - strand at 168.931 kb on + strand at 168.931 kb on + strand at 168.932 kb on - strand at 168.932 kb on - strand at 168.936 kb on + strand at 168.937 kb on - strand at 168.939 kb on + strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.939 kb on - strand at 168.941 kb on + strand at 168.941 kb on + strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.949 kb on - strand at 168.968 kb on - strand at 169.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 167,301 + -1.9 167,301 + -0.6 167,301 + -0.4 167,301 + +0.5 167,301 + -1.4 167,301 + -0.2 167,309 - -1.4 167,309 - +0.9 167,309 - +0.8 167,309 - +1.9 167,319 - -0.4 167,353 - -1.5 167,366 + -0.1 167,366 + +1.9 167,471 + +0.0 167,487 - +0.4 167,528 - PGA1_c01830 0.22 +1.0 167,558 + PGA1_c01830 0.36 -1.1 167,593 - PGA1_c01830 0.52 +0.1 167,596 + PGA1_c01830 0.53 -0.3 167,623 - PGA1_c01830 0.66 +1.4 167,744 + +1.8 167,910 + -1.7 167,929 + -2.4 167,942 - +0.5 167,952 + +2.1 167,960 - +0.1 167,960 - +1.6 167,960 - +0.9 168,018 - +0.4 168,042 + +0.6 168,048 + -0.2 168,048 + -0.4 168,089 - -0.0 168,089 - +0.2 168,113 + +1.3 168,113 + +0.4 168,113 + -0.0 168,115 + -0.9 168,121 - +0.1 168,123 - +1.0 168,138 - +1.4 168,219 + +0.6 168,272 + -0.7 168,376 - PGA1_c01840 0.17 +0.6 168,430 + PGA1_c01840 0.27 -1.6 168,435 + PGA1_c01840 0.28 -0.4 168,435 + PGA1_c01840 0.28 +1.2 168,443 - PGA1_c01840 0.30 -1.1 168,452 + PGA1_c01840 0.32 -0.8 168,482 + PGA1_c01840 0.37 -0.6 168,482 + PGA1_c01840 0.37 +0.1 168,490 - PGA1_c01840 0.39 +0.1 168,491 + PGA1_c01840 0.39 +0.3 168,497 + PGA1_c01840 0.40 -2.8 168,499 - PGA1_c01840 0.41 +0.7 168,499 - PGA1_c01840 0.41 +0.7 168,505 - PGA1_c01840 0.42 -1.2 168,511 + PGA1_c01840 0.43 -1.1 168,519 - PGA1_c01840 0.45 -0.4 168,519 - PGA1_c01840 0.45 +0.0 168,543 + PGA1_c01840 0.49 -0.2 168,543 + PGA1_c01840 0.49 -0.1 168,548 + PGA1_c01840 0.50 -0.1 168,548 - PGA1_c01840 0.50 -0.8 168,551 - PGA1_c01840 0.51 -0.8 168,551 - PGA1_c01840 0.51 -0.8 168,551 - PGA1_c01840 0.51 +0.4 168,551 - PGA1_c01840 0.51 +0.3 168,607 + PGA1_c01840 0.62 +1.7 168,619 + PGA1_c01840 0.64 -1.5 168,626 - PGA1_c01840 0.65 -0.2 168,664 + PGA1_c01840 0.73 +0.1 168,664 + PGA1_c01840 0.73 +0.0 168,664 + PGA1_c01840 0.73 +0.3 168,664 + PGA1_c01840 0.73 -0.2 168,672 - PGA1_c01840 0.74 +0.0 168,672 - PGA1_c01840 0.74 -1.1 168,688 + PGA1_c01840 0.78 -2.1 168,708 + PGA1_c01840 0.81 -0.1 168,747 - PGA1_c01840 0.89 -1.2 168,747 - PGA1_c01840 0.89 +1.5 168,752 - -1.5 168,754 + -0.2 168,762 - +0.8 168,786 - -0.1 168,880 + +1.0 168,888 - -0.4 168,894 + +0.4 168,894 + +0.0 168,901 - +2.3 168,917 + +0.5 168,917 + -1.1 168,925 - +0.4 168,931 + -1.6 168,931 + +2.1 168,932 - +0.5 168,932 - +1.1 168,936 + -0.8 168,937 - -1.5 168,939 + -1.5 168,939 - +1.0 168,939 - +0.5 168,939 - -1.3 168,939 - +0.9 168,941 + -2.0 168,941 + -2.7 168,949 - +0.5 168,949 - +0.3 168,949 - +0.6 168,949 - -0.6 168,949 - -0.1 168,968 - -0.4 169,518 + +1.3
Or see this region's nucleotide sequence