Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12500

Experiment: Carbon source L-Ornithine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source L-Ornithine 5 mM
1,297,424	-		PGA1_c12490	0.33	-1.5
1,297,429	-		PGA1_c12490	0.34	+0.1
1,297,480	+		PGA1_c12490	0.38	+0.2
1,297,539	+		PGA1_c12490	0.43	+0.6
1,297,558	+		PGA1_c12490	0.44	-1.5
1,297,621	+		PGA1_c12490	0.49	+1.6
1,297,621	+		PGA1_c12490	0.49	+0.3
1,297,621	+		PGA1_c12490	0.49	+0.9
1,297,629	-		PGA1_c12490	0.50	-1.2
1,297,663	-		PGA1_c12490	0.53	-2.4
1,297,688	-		PGA1_c12490	0.55	+1.3
1,297,738	-		PGA1_c12490	0.59	+0.5
1,297,742	-		PGA1_c12490	0.59	+0.5
1,297,888	+		PGA1_c12490	0.71	+1.5
1,297,984	+		PGA1_c12490	0.78	+1.2
1,298,005	-		PGA1_c12490	0.80	+0.8
1,298,062	+		PGA1_c12490	0.84	+0.3
1,298,067	+		PGA1_c12490	0.85	+0.6
1,298,067	+		PGA1_c12490	0.85	-0.7
1,298,077	+		PGA1_c12490	0.86	+0.2
1,298,077	+		PGA1_c12490	0.86	-0.1
1,298,077	+		PGA1_c12490	0.86	-2.8
1,298,133	-				-2.2
1,298,133	-				-0.9
1,298,135	+				-1.4
1,298,135	+				+0.1
1,298,135	+				+0.2
1,298,135	+				-0.4
1,298,138	-				-0.4
1,298,143	-				+1.7
1,298,143	-				+0.1
1,298,165	+				-0.3
1,298,170	+				+0.5
1,298,173	-				+0.2
1,298,173	-				+1.1
1,298,239	-				+0.8
1,298,346	+				+0.8
1,298,354	+				-2.0
1,298,419	+				-0.7
1,298,427	-				-1.0
1,298,428	+				-0.5
1,298,436	-				+0.6
1,298,436	-				+0.9
1,298,477	+		PGA1_c12500	0.12	-0.8
1,298,477	+		PGA1_c12500	0.12	+1.0
1,298,485	-		PGA1_c12500	0.13	+0.0
1,298,485	-		PGA1_c12500	0.13	-0.6
1,298,553	-		PGA1_c12500	0.20	+0.3
1,298,593	-		PGA1_c12500	0.25	-0.6
1,298,600	-		PGA1_c12500	0.26	-0.2
1,298,616	+		PGA1_c12500	0.28	-0.7
1,298,616	+		PGA1_c12500	0.28	+0.5
1,298,621	+		PGA1_c12500	0.28	+1.0
1,298,621	+		PGA1_c12500	0.28	+1.9
1,298,639	-		PGA1_c12500	0.30	-0.2
1,298,675	-		PGA1_c12500	0.34	-0.1
1,298,705	+		PGA1_c12500	0.38	-0.2
1,298,728	+		PGA1_c12500	0.40	-1.8
1,298,743	+		PGA1_c12500	0.42	+1.5
1,298,760	+		PGA1_c12500	0.44	+1.5
1,298,852	+		PGA1_c12500	0.54	-0.1
1,298,863	+		PGA1_c12500	0.56	-1.0
1,298,957	-		PGA1_c12500	0.66	-2.1
1,298,969	+		PGA1_c12500	0.68	+1.2
1,298,977	+		PGA1_c12500	0.68	+0.5
1,299,033	+		PGA1_c12500	0.75	-0.0
1,299,038	+		PGA1_c12500	0.75	+1.8
1,299,045	+		PGA1_c12500	0.76	-0.4
1,299,046	-		PGA1_c12500	0.76	-0.5
1,299,101	+		PGA1_c12500	0.83	-0.4
1,299,109	-		PGA1_c12500	0.83	+1.6
1,299,151	+		PGA1_c12500	0.88	-0.4
1,299,173	+				+0.6
1,299,205	+				+0.4
1,299,242	+				-0.4
1,299,243	+				-0.1
1,299,288	+				+1.3
1,299,288	+				+1.4
1,299,288	+				-1.7
1,299,293	+				-1.8
1,299,293	+				-1.4
1,299,301	-				-1.5
1,299,301	-				-1.1
1,299,301	-				-2.0
1,299,366	-				-1.0
1,299,366	-				-0.1
1,299,431	+		PGA1_c12510	0.14	-1.8
1,299,431	+		PGA1_c12510	0.14	+0.7
1,299,438	+		PGA1_c12510	0.15	+0.5
1,299,466	-		PGA1_c12510	0.17	-0.2
1,299,475	+		PGA1_c12510	0.18	+1.6
1,299,481	-		PGA1_c12510	0.19	-1.1
1,299,483	-		PGA1_c12510	0.19	-0.8
1,299,551	-		PGA1_c12510	0.26	-0.4
1,299,770	+		PGA1_c12510	0.48	+0.6
1,299,770	+		PGA1_c12510	0.48	+0.9
1,299,797	+		PGA1_c12510	0.50	+1.2
1,299,840	-		PGA1_c12510	0.55	-1.4
1,299,847	-		PGA1_c12510	0.55	-1.7
1,299,860	-		PGA1_c12510	0.57	-0.2
1,299,891	+		PGA1_c12510	0.60	-0.7
1,299,904	-		PGA1_c12510	0.61	-1.9
1,299,965	+		PGA1_c12510	0.67	-1.1
1,299,971	-		PGA1_c12510	0.68	+1.2
1,300,008	+		PGA1_c12510	0.71	+0.3
1,300,011	-		PGA1_c12510	0.72	-0.7
1,300,054	+		PGA1_c12510	0.76	+1.0
1,300,062	-		PGA1_c12510	0.77	-0.9
1,300,083	+		PGA1_c12510	0.79	+1.7
1,300,122	+		PGA1_c12510	0.83	+1.0
1,300,122	+		PGA1_c12510	0.83	+0.2
1,300,153	-		PGA1_c12510	0.86	-0.5
1,300,184	+		PGA1_c12510	0.89	-2.2
1,300,192	+		PGA1_c12510	0.89	-0.5
1,300,197	+				-1.5