Experiment: caffeic 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000834 and ABIE53_000835 are separated by 159 nucleotides ABIE53_000835 and ABIE53_000836 are separated by 90 nucleotides ABIE53_000836 and ABIE53_000837 are separated by 81 nucleotides ABIE53_000837 and ABIE53_000838 are separated by 149 nucleotides
ABIE53_000834: ABIE53_000834 - LysR family hydrogen peroxide-inducible transcriptional activator, at 905,608 to 906,567
_000834
ABIE53_000835: ABIE53_000835 - hypothetical protein, at 906,727 to 906,864
_000835
ABIE53_000836: ABIE53_000836 - catalase, at 906,955 to 908,406
_000836
ABIE53_000837: ABIE53_000837 - hypothetical protein, at 908,488 to 908,649
_000837
ABIE53_000838: ABIE53_000838 - starvation-inducible DNA-binding protein, at 908,799 to 909,287
_000838
Position (kb) 906
907
908
909 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 905.990 kb on - strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.312 kb on + strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.313 kb on - strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.409 kb on + strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.410 kb on - strand, within ABIE53_000834 at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.693 kb on + strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.694 kb on - strand at 906.862 kb on + strand at 906.863 kb on - strand at 906.870 kb on + strand at 906.870 kb on + strand at 906.871 kb on - strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.055 kb on + strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.056 kb on - strand at 907.171 kb on + strand, within ABIE53_000836 at 907.172 kb on - strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.300 kb on + strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.301 kb on - strand, within ABIE53_000836 at 907.354 kb on - strand, within ABIE53_000836 at 907.408 kb on + strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.409 kb on - strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.516 kb on + strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.517 kb on - strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.549 kb on + strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.550 kb on - strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.765 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.813 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836 at 907.864 kb on + strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.865 kb on - strand, within ABIE53_000836 at 907.963 kb on + strand, within ABIE53_000836 at 907.964 kb on - strand, within ABIE53_000836 at 907.964 kb on - strand, within ABIE53_000836 at 907.981 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.101 kb on + strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.102 kb on - strand, within ABIE53_000836 at 908.206 kb on + strand, within ABIE53_000836 at 908.206 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.209 kb on + strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.210 kb on - strand, within ABIE53_000836 at 908.286 kb on + strand at 908.286 kb on + strand at 908.286 kb on + strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.287 kb on - strand at 908.353 kb on + strand at 908.353 kb on + strand at 908.353 kb on + strand at 908.354 kb on - strand at 908.354 kb on - strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.404 kb on + strand at 908.405 kb on - strand at 908.405 kb on - strand at 908.416 kb on + strand at 908.416 kb on + strand at 908.417 kb on - strand at 908.417 kb on - strand at 908.463 kb on - strand at 908.463 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.469 kb on - strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.471 kb on + strand at 908.472 kb on - strand at 908.472 kb on - strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.696 kb on + strand at 908.697 kb on - strand at 908.697 kb on - strand at 908.701 kb on + strand at 908.701 kb on + strand at 908.701 kb on + strand at 908.702 kb on - strand at 908.702 kb on - strand at 908.702 kb on - strand at 908.760 kb on - strand at 908.760 kb on - strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.777 kb on + strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.778 kb on - strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.818 kb on + strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.819 kb on - strand at 908.832 kb on - strand at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.898 kb on + strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.899 kb on - strand, within ABIE53_000838 at 908.907 kb on + strand, within ABIE53_000838 at 908.907 kb on + strand, within ABIE53_000838 at 908.908 kb on - strand, within ABIE53_000838 at 908.985 kb on + strand, within ABIE53_000838 at 908.985 kb on + strand, within ABIE53_000838 at 908.986 kb on - strand, within ABIE53_000838 at 908.986 kb on - strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.060 kb on + strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.061 kb on - strand, within ABIE53_000838 at 909.062 kb on + strand, within ABIE53_000838 at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.349 kb on + strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand at 909.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction caffeic 5 mM in soil extract remove 905,990 - ABIE53_000834 0.40 +1.1 906,312 + ABIE53_000834 0.73 +0.5 906,312 + ABIE53_000834 0.73 +0.3 906,313 - ABIE53_000834 0.73 -0.6 906,313 - ABIE53_000834 0.73 -0.2 906,313 - ABIE53_000834 0.73 +0.5 906,409 + ABIE53_000834 0.83 +0.1 906,409 + ABIE53_000834 0.83 -0.6 906,409 + ABIE53_000834 0.83 +1.1 906,410 - ABIE53_000834 0.84 -0.5 906,410 - ABIE53_000834 0.84 +0.2 906,410 - ABIE53_000834 0.84 +1.1 906,693 + +0.5 906,693 + -1.9 906,693 + -0.5 906,693 + +0.9 906,693 + +0.1 906,693 + +0.4 906,693 + -1.7 906,693 + +0.2 906,693 + +0.7 906,693 + -0.4 906,693 + +0.8 906,694 - -1.0 906,694 - +0.6 906,694 - +0.1 906,694 - -1.0 906,694 - -0.7 906,694 - +0.5 906,694 - +0.5 906,694 - +0.2 906,862 + +0.8 906,863 - -1.3 906,870 + -1.2 906,870 + +0.1 906,871 - -1.9 907,055 + +0.1 907,055 + -0.2 907,055 + +0.3 907,055 + -1.1 907,055 + +0.1 907,055 + -1.2 907,055 + +2.1 907,055 + -0.3 907,055 + -0.5 907,055 + -3.3 907,055 + -0.9 907,055 + -0.5 907,055 + -2.0 907,055 + -1.0 907,056 - +0.2 907,056 - -0.5 907,056 - -0.8 907,056 - -0.2 907,056 - -1.4 907,056 - -0.6 907,056 - -0.5 907,056 - -1.7 907,056 - -1.6 907,056 - -2.4 907,056 - -1.2 907,056 - -0.3 907,056 - +3.7 907,056 - -0.7 907,171 + ABIE53_000836 0.15 +3.7 907,172 - ABIE53_000836 0.15 +0.5 907,300 + ABIE53_000836 0.24 -1.6 907,300 + ABIE53_000836 0.24 -1.4 907,300 + ABIE53_000836 0.24 -2.2 907,300 + ABIE53_000836 0.24 -0.2 907,301 - ABIE53_000836 0.24 -0.4 907,301 - ABIE53_000836 0.24 -0.1 907,301 - ABIE53_000836 0.24 -1.5 907,301 - ABIE53_000836 0.24 -0.7 907,354 - ABIE53_000836 0.27 -1.7 907,408 + ABIE53_000836 0.31 +0.7 907,409 - ABIE53_000836 0.31 -2.8 907,409 - ABIE53_000836 0.31 -1.1 907,516 + ABIE53_000836 0.39 -1.4 907,516 + ABIE53_000836 0.39 -2.2 907,516 + ABIE53_000836 0.39 +0.8 907,516 + ABIE53_000836 0.39 -1.1 907,516 + ABIE53_000836 0.39 -1.6 907,516 + ABIE53_000836 0.39 -1.6 907,516 + ABIE53_000836 0.39 +0.4 907,517 - ABIE53_000836 0.39 -1.6 907,517 - ABIE53_000836 0.39 -0.7 907,517 - ABIE53_000836 0.39 -1.1 907,517 - ABIE53_000836 0.39 +1.1 907,517 - ABIE53_000836 0.39 -0.2 907,549 + ABIE53_000836 0.41 +0.1 907,549 + ABIE53_000836 0.41 -1.7 907,549 + ABIE53_000836 0.41 -2.4 907,549 + ABIE53_000836 0.41 +0.5 907,549 + ABIE53_000836 0.41 -2.1 907,550 - ABIE53_000836 0.41 -0.2 907,550 - ABIE53_000836 0.41 -1.1 907,765 + ABIE53_000836 0.56 -1.3 907,765 + ABIE53_000836 0.56 -0.1 907,813 + ABIE53_000836 0.59 -0.0 907,813 + ABIE53_000836 0.59 -0.7 907,864 + ABIE53_000836 0.63 -1.1 907,864 + ABIE53_000836 0.63 +0.1 907,865 - ABIE53_000836 0.63 -0.3 907,865 - ABIE53_000836 0.63 -0.5 907,865 - ABIE53_000836 0.63 -1.1 907,963 + ABIE53_000836 0.69 +2.1 907,964 - ABIE53_000836 0.69 +1.1 907,964 - ABIE53_000836 0.69 -0.3 907,981 + ABIE53_000836 0.71 -1.8 908,101 + ABIE53_000836 0.79 +0.9 908,101 + ABIE53_000836 0.79 -2.0 908,101 + ABIE53_000836 0.79 +0.4 908,101 + ABIE53_000836 0.79 -0.9 908,101 + ABIE53_000836 0.79 +1.1 908,101 + ABIE53_000836 0.79 -0.6 908,101 + ABIE53_000836 0.79 -0.3 908,101 + ABIE53_000836 0.79 -1.2 908,101 + ABIE53_000836 0.79 -1.2 908,101 + ABIE53_000836 0.79 +0.6 908,101 + ABIE53_000836 0.79 +0.5 908,101 + ABIE53_000836 0.79 -1.1 908,101 + ABIE53_000836 0.79 -0.2 908,102 - ABIE53_000836 0.79 -1.9 908,102 - ABIE53_000836 0.79 +2.1 908,102 - ABIE53_000836 0.79 -2.1 908,102 - ABIE53_000836 0.79 +1.1 908,102 - ABIE53_000836 0.79 -1.3 908,102 - ABIE53_000836 0.79 +1.1 908,102 - ABIE53_000836 0.79 +0.0 908,102 - ABIE53_000836 0.79 -1.1 908,102 - ABIE53_000836 0.79 +2.1 908,102 - ABIE53_000836 0.79 -0.7 908,102 - ABIE53_000836 0.79 -1.1 908,206 + ABIE53_000836 0.86 -1.1 908,206 + ABIE53_000836 0.86 -3.5 908,209 + ABIE53_000836 0.86 -1.2 908,209 + ABIE53_000836 0.86 +0.7 908,209 + ABIE53_000836 0.86 -0.4 908,210 - ABIE53_000836 0.86 -3.6 908,210 - ABIE53_000836 0.86 -1.1 908,210 - ABIE53_000836 0.86 +0.5 908,210 - ABIE53_000836 0.86 -1.8 908,210 - ABIE53_000836 0.86 -0.0 908,286 + -0.6 908,286 + -0.7 908,286 + -0.2 908,287 - -0.2 908,287 - -0.5 908,287 - -0.1 908,287 - -1.3 908,287 - +0.1 908,287 - -0.4 908,287 - -1.0 908,353 + -0.9 908,353 + -0.5 908,353 + +0.1 908,354 - -2.8 908,354 - -1.8 908,404 + +0.1 908,404 + -0.0 908,404 + +0.8 908,404 + -0.9 908,404 + +1.4 908,405 - -1.5 908,405 - -0.2 908,416 + +0.6 908,416 + +1.6 908,417 - -0.8 908,417 - +0.6 908,463 - +2.1 908,463 - +0.1 908,469 - +0.5 908,469 - +0.8 908,469 - -0.7 908,471 + -0.9 908,471 + +0.5 908,471 + +1.3 908,471 + -0.7 908,471 + +2.1 908,471 + +0.3 908,471 + -0.9 908,471 + +0.5 908,472 - -1.9 908,472 - +0.4 908,696 + -0.1 908,696 + -0.2 908,696 + -0.2 908,696 + +2.1 908,696 + -0.8 908,696 + +0.7 908,696 + -0.2 908,697 - -1.4 908,697 - -0.5 908,701 + -1.0 908,701 + +0.1 908,701 + +0.5 908,702 - -1.9 908,702 - +0.1 908,702 - -2.2 908,760 - +0.1 908,760 - -2.0 908,777 + +0.5 908,777 + +1.4 908,777 + -0.4 908,777 + -0.9 908,778 - -0.5 908,778 - -0.2 908,778 - -0.7 908,778 - -2.6 908,818 + +0.1 908,818 + -1.4 908,818 + -4.1 908,818 + -0.9 908,818 + -1.1 908,818 + -0.2 908,819 - -2.8 908,819 - -1.4 908,819 - -0.9 908,819 - -2.2 908,832 - -3.5 908,898 + ABIE53_000838 0.20 -2.2 908,898 + ABIE53_000838 0.20 -3.5 908,898 + ABIE53_000838 0.20 -2.2 908,898 + ABIE53_000838 0.20 +0.1 908,898 + ABIE53_000838 0.20 -4.2 908,898 + ABIE53_000838 0.20 -3.0 908,898 + ABIE53_000838 0.20 -0.5 908,898 + ABIE53_000838 0.20 -0.7 908,898 + ABIE53_000838 0.20 +0.5 908,899 - ABIE53_000838 0.20 +1.1 908,899 - ABIE53_000838 0.20 -0.7 908,899 - ABIE53_000838 0.20 -2.8 908,899 - ABIE53_000838 0.20 +1.1 908,899 - ABIE53_000838 0.20 -3.3 908,907 + ABIE53_000838 0.22 -3.5 908,907 + ABIE53_000838 0.22 -0.2 908,908 - ABIE53_000838 0.22 -1.7 908,985 + ABIE53_000838 0.38 -4.7 908,985 + ABIE53_000838 0.38 -0.7 908,986 - ABIE53_000838 0.38 -3.6 908,986 - ABIE53_000838 0.38 -0.9 909,060 + ABIE53_000838 0.53 -1.2 909,060 + ABIE53_000838 0.53 -2.7 909,060 + ABIE53_000838 0.53 -2.4 909,060 + ABIE53_000838 0.53 -3.6 909,060 + ABIE53_000838 0.53 -0.9 909,061 - ABIE53_000838 0.54 -2.3 909,061 - ABIE53_000838 0.54 -0.9 909,061 - ABIE53_000838 0.54 -1.4 909,061 - ABIE53_000838 0.54 +0.9 909,061 - ABIE53_000838 0.54 -1.5 909,061 - ABIE53_000838 0.54 -2.2 909,062 + ABIE53_000838 0.54 -3.3 909,349 + -0.8 909,349 + +0.1 909,349 + +0.2 909,349 + +0.5 909,349 + -0.2 909,349 + +0.2 909,349 + -0.3 909,349 + -0.1 909,349 + -0.0 909,350 - +0.1 909,350 - -1.3 909,350 - -0.7 909,350 - -1.5 909,350 - -1.4
Or see this region's nucleotide sequence