Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0149

Experiment: MoLS4 without Pantothenic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0148 and DVUA0149 are separated by 31 nucleotidesDVUA0149 and DVUA0150 are separated by 192 nucleotides DVUA0148: DVUA0148 - major facilitator superfamily protein (TIGR), at 193,583 to 196,600 DVUA0148 DVUA0149: DVUA0149 - hypothetical protein (TIGR), at 196,632 to 198,416 DVUA0149 DVUA0150: DVUA0150 - bacterial extracellular solute-binding protein, family 3 (TIGR), at 198,609 to 199,346 DVUA0150 Position (kb) 196 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 195.685 kb on + strand, within DVUA0148at 195.710 kb on - strand, within DVUA0148at 195.762 kb on + strand, within DVUA0148at 195.857 kb on - strand, within DVUA0148at 195.872 kb on + strand, within DVUA0148at 195.897 kb on + strand, within DVUA0148at 196.014 kb on - strand, within DVUA0148at 196.032 kb on + strand, within DVUA0148at 196.062 kb on + strand, within DVUA0148at 196.118 kb on + strand, within DVUA0148at 196.123 kb on + strand, within DVUA0148at 196.123 kb on + strand, within DVUA0148at 196.131 kb on - strand, within DVUA0148at 196.136 kb on - strand, within DVUA0148at 196.181 kb on - strand, within DVUA0148at 196.181 kb on - strand, within DVUA0148at 196.228 kb on + strand, within DVUA0148at 196.236 kb on - strand, within DVUA0148at 196.236 kb on - strand, within DVUA0148at 196.276 kb on - strand, within DVUA0148at 196.329 kb on + strandat 196.329 kb on + strandat 196.347 kb on - strandat 196.365 kb on - strandat 196.508 kb on - strandat 196.530 kb on - strandat 196.621 kb on - strandat 196.630 kb on - strandat 196.640 kb on - strandat 196.642 kb on + strandat 196.642 kb on + strandat 196.656 kb on + strandat 196.743 kb on - strandat 196.745 kb on + strandat 196.818 kb on - strand, within DVUA0149at 196.820 kb on + strand, within DVUA0149at 196.902 kb on - strand, within DVUA0149at 196.939 kb on - strand, within DVUA0149at 196.957 kb on + strand, within DVUA0149at 197.135 kb on + strand, within DVUA0149at 197.213 kb on + strand, within DVUA0149at 197.228 kb on + strand, within DVUA0149at 197.236 kb on - strand, within DVUA0149at 197.368 kb on - strand, within DVUA0149at 197.386 kb on - strand, within DVUA0149at 197.393 kb on + strand, within DVUA0149at 197.393 kb on + strand, within DVUA0149at 197.493 kb on + strand, within DVUA0149at 197.522 kb on + strand, within DVUA0149at 197.525 kb on - strand, within DVUA0149at 197.536 kb on - strand, within DVUA0149at 197.543 kb on + strand, within DVUA0149at 197.549 kb on - strand, within DVUA0149at 197.551 kb on - strand, within DVUA0149at 197.741 kb on - strand, within DVUA0149at 197.768 kb on - strand, within DVUA0149at 197.830 kb on - strand, within DVUA0149at 197.859 kb on + strand, within DVUA0149at 197.978 kb on - strand, within DVUA0149at 197.997 kb on + strand, within DVUA0149at 198.017 kb on - strand, within DVUA0149at 198.071 kb on + strand, within DVUA0149at 198.093 kb on + strand, within DVUA0149at 198.139 kb on + strand, within DVUA0149at 198.173 kb on + strand, within DVUA0149at 198.173 kb on + strand, within DVUA0149at 198.348 kb on - strandat 198.382 kb on + strandat 198.390 kb on - strandat 198.433 kb on - strandat 198.607 kb on + strandat 198.696 kb on + strand, within DVUA0150at 198.919 kb on + strand, within DVUA0150at 198.919 kb on + strand, within DVUA0150at 198.927 kb on - strand, within DVUA0150at 198.941 kb on + strand, within DVUA0150at 199.042 kb on - strand, within DVUA0150at 199.043 kb on + strand, within DVUA0150at 199.107 kb on + strand, within DVUA0150at 199.150 kb on + strand, within DVUA0150at 199.158 kb on - strand, within DVUA0150at 199.158 kb on - strand, within DVUA0150at 199.278 kb on - strandat 199.364 kb on + strandat 199.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Pantothenic
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195,685 + DVUA0148 0.70 +0.1
195,710 - DVUA0148 0.70 +2.5
195,762 + DVUA0148 0.72 +0.3
195,857 - DVUA0148 0.75 +0.3
195,872 + DVUA0148 0.76 +0.6
195,897 + DVUA0148 0.77 -0.1
196,014 - DVUA0148 0.81 +0.3
196,032 + DVUA0148 0.81 +0.1
196,062 + DVUA0148 0.82 -1.2
196,118 + DVUA0148 0.84 +0.0
196,123 + DVUA0148 0.84 -0.5
196,123 + DVUA0148 0.84 +0.6
196,131 - DVUA0148 0.84 +0.0
196,136 - DVUA0148 0.85 +0.5
196,181 - DVUA0148 0.86 -0.2
196,181 - DVUA0148 0.86 -0.0
196,228 + DVUA0148 0.88 +1.1
196,236 - DVUA0148 0.88 -0.4
196,236 - DVUA0148 0.88 +0.2
196,276 - DVUA0148 0.89 -0.2
196,329 + +0.4
196,329 + +0.0
196,347 - -0.4
196,365 - +0.4
196,508 - -0.2
196,530 - -0.2
196,621 - -0.8
196,630 - +0.3
196,640 - +1.0
196,642 + -0.3
196,642 + -0.2
196,656 + -1.2
196,743 - +0.0
196,745 + -0.2
196,818 - DVUA0149 0.10 +0.1
196,820 + DVUA0149 0.11 +0.0
196,902 - DVUA0149 0.15 +1.3
196,939 - DVUA0149 0.17 +0.3
196,957 + DVUA0149 0.18 -0.1
197,135 + DVUA0149 0.28 +0.7
197,213 + DVUA0149 0.33 -1.1
197,228 + DVUA0149 0.33 -2.5
197,236 - DVUA0149 0.34 +2.0
197,368 - DVUA0149 0.41 +0.5
197,386 - DVUA0149 0.42 +0.6
197,393 + DVUA0149 0.43 -0.4
197,393 + DVUA0149 0.43 +1.4
197,493 + DVUA0149 0.48 +0.6
197,522 + DVUA0149 0.50 +1.6
197,525 - DVUA0149 0.50 +0.1
197,536 - DVUA0149 0.51 +0.1
197,543 + DVUA0149 0.51 -0.0
197,549 - DVUA0149 0.51 -0.0
197,551 - DVUA0149 0.51 +0.0
197,741 - DVUA0149 0.62 +0.8
197,768 - DVUA0149 0.64 -0.1
197,830 - DVUA0149 0.67 -0.2
197,859 + DVUA0149 0.69 +1.0
197,978 - DVUA0149 0.75 +0.3
197,997 + DVUA0149 0.76 +0.1
198,017 - DVUA0149 0.78 +1.3
198,071 + DVUA0149 0.81 -0.1
198,093 + DVUA0149 0.82 +0.1
198,139 + DVUA0149 0.84 -0.1
198,173 + DVUA0149 0.86 +1.1
198,173 + DVUA0149 0.86 -0.2
198,348 - -0.7
198,382 + -0.4
198,390 - -0.8
198,433 - -0.4
198,607 + -0.1
198,696 + DVUA0150 0.12 +0.7
198,919 + DVUA0150 0.42 -1.0
198,919 + DVUA0150 0.42 -0.2
198,927 - DVUA0150 0.43 -0.0
198,941 + DVUA0150 0.45 -0.8
199,042 - DVUA0150 0.59 -0.6
199,043 + DVUA0150 0.59 +0.7
199,107 + DVUA0150 0.67 -0.3
199,150 + DVUA0150 0.73 +0.0
199,158 - DVUA0150 0.74 +0.3
199,158 - DVUA0150 0.74 -0.6
199,278 - +0.4
199,364 + +0.8
199,395 - -0.4

Or see this region's nucleotide sequence