Experiment: MoLS4 without Pantothenic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gdp and hup-2 are separated by 119 nucleotides hup-2 and DORF7327 are separated by 292 nucleotides DORF7327 and DVU0765 overlap by 8 nucleotides DVU0765 and DVU0766 are separated by 198 nucleotides DVU0766 and DVU0767 are separated by 120 nucleotides
DVU0763: gdp - GGDEF domain protein (TIGR), at 853,682 to 854,617
gdp
DVU0764: hup-2 - DNA-binding protein HU (TIGR), at 854,737 to 855,012
hup-2
DORF7327: DORF7327 - no description, at 855,305 to 855,571
DORF7327
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
DVU0766: DVU0766 - transporter, putative (TIGR), at 857,127 to 857,657
DVU0766
DVU0767: DVU0767 - aminotransferase, class V (TIGR), at 857,778 to 858,884
DVU0767
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 854.624 kb on - strand at 854.682 kb on - strand at 854.752 kb on - strand at 854.788 kb on + strand, within hup-2 at 854.801 kb on - strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 855.166 kb on + strand at 855.166 kb on + strand at 855.172 kb on - strand at 855.174 kb on - strand at 855.174 kb on - strand at 855.184 kb on - strand at 855.184 kb on - strand at 855.208 kb on - strand at 855.258 kb on - strand at 855.282 kb on + strand at 855.289 kb on + strand at 855.290 kb on - strand at 855.311 kb on - strand at 855.367 kb on + strand, within DORF7327 at 855.385 kb on + strand, within DORF7327 at 855.398 kb on + strand, within DORF7327 at 855.414 kb on - strand, within DORF7327 at 855.453 kb on - strand, within DORF7327 at 855.570 kb on - strand at 855.603 kb on - strand at 855.634 kb on + strand at 855.677 kb on - strand at 855.694 kb on + strand at 855.779 kb on - strand, within DVU0765 at 855.891 kb on - strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 856.027 kb on + strand, within DVU0765 at 856.154 kb on + strand, within DVU0765 at 856.202 kb on + strand, within DVU0765 at 856.270 kb on - strand, within DVU0765 at 856.328 kb on + strand, within DVU0765 at 856.343 kb on + strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.544 kb on + strand, within DVU0765 at 856.552 kb on - strand, within DVU0765 at 856.626 kb on - strand, within DVU0765 at 856.634 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.733 kb on + strand, within DVU0765 at 856.737 kb on + strand, within DVU0765 at 856.777 kb on + strand, within DVU0765 at 856.779 kb on + strand, within DVU0765 at 856.787 kb on - strand, within DVU0765 at 856.829 kb on - strand at 856.863 kb on - strand at 856.987 kb on - strand at 857.010 kb on + strand at 857.012 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.083 kb on + strand at 857.143 kb on + strand at 857.266 kb on - strand, within DVU0766 at 857.310 kb on + strand, within DVU0766 at 857.317 kb on - strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.400 kb on + strand, within DVU0766 at 857.401 kb on - strand, within DVU0766 at 857.445 kb on - strand, within DVU0766 at 857.450 kb on - strand, within DVU0766 at 857.520 kb on - strand, within DVU0766 at 857.534 kb on - strand, within DVU0766 at 857.556 kb on - strand, within DVU0766 at 857.596 kb on - strand, within DVU0766 at 857.601 kb on - strand, within DVU0766 at 857.606 kb on - strand at 857.621 kb on + strand at 857.637 kb on + strand at 857.669 kb on - strand at 857.690 kb on - strand at 857.829 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Pantothenic remove 854,624 - -0.8 854,682 - -0.4 854,752 - -0.6 854,788 + hup-2 DVU0764 0.18 -0.4 854,801 - hup-2 DVU0764 0.23 -0.5 854,885 + hup-2 DVU0764 0.54 -0.1 854,885 + hup-2 DVU0764 0.54 +0.0 855,166 + -0.1 855,166 + -1.4 855,172 - -0.4 855,174 - +1.1 855,174 - +0.1 855,184 - -0.2 855,184 - -1.0 855,208 - -0.3 855,258 - +2.0 855,282 + -0.5 855,289 + -0.4 855,290 - -1.3 855,311 - -0.0 855,367 + DORF7327 0.23 +1.1 855,385 + DORF7327 0.30 +1.7 855,398 + DORF7327 0.35 -0.2 855,414 - DORF7327 0.41 -0.4 855,453 - DORF7327 0.55 -1.2 855,570 - -1.4 855,603 - +1.1 855,634 + +0.3 855,677 - -0.3 855,694 + -0.2 855,779 - DVU0765 0.16 -0.7 855,891 - DVU0765 0.24 -0.8 855,908 + DVU0765 0.25 -0.6 855,908 + DVU0765 0.25 -0.2 855,908 + DVU0765 0.25 -0.4 855,908 + DVU0765 0.25 +0.0 856,027 + DVU0765 0.34 -0.6 856,154 + DVU0765 0.43 -0.4 856,202 + DVU0765 0.47 -0.4 856,270 - DVU0765 0.52 -2.7 856,328 + DVU0765 0.56 -0.0 856,343 + DVU0765 0.57 -0.7 856,510 - DVU0765 0.69 -0.4 856,510 - DVU0765 0.69 -0.2 856,510 - DVU0765 0.69 -1.8 856,544 + DVU0765 0.72 -0.2 856,552 - DVU0765 0.72 -0.3 856,626 - DVU0765 0.78 -0.0 856,634 - DVU0765 0.78 -0.3 856,668 - DVU0765 0.81 -0.4 856,668 - DVU0765 0.81 +0.2 856,733 + DVU0765 0.86 -0.9 856,737 + DVU0765 0.86 -0.5 856,777 + DVU0765 0.89 -1.3 856,779 + DVU0765 0.89 -1.2 856,787 - DVU0765 0.90 -0.9 856,829 - -0.4 856,863 - -0.3 856,987 - -0.2 857,010 + +0.3 857,012 - -0.5 857,056 - -0.8 857,056 - -0.3 857,056 - -0.5 857,083 + +0.8 857,143 + +0.1 857,266 - DVU0766 0.26 +0.2 857,310 + DVU0766 0.34 -0.2 857,317 - DVU0766 0.36 -1.3 857,393 + DVU0766 0.50 +0.1 857,393 + DVU0766 0.50 -0.0 857,393 + DVU0766 0.50 +0.1 857,400 + DVU0766 0.51 -0.2 857,401 - DVU0766 0.52 +0.2 857,445 - DVU0766 0.60 -0.5 857,450 - DVU0766 0.61 +0.2 857,520 - DVU0766 0.74 -0.1 857,534 - DVU0766 0.77 -0.1 857,556 - DVU0766 0.81 -0.1 857,596 - DVU0766 0.88 -0.3 857,601 - DVU0766 0.89 -0.2 857,606 - -1.2 857,621 + -0.2 857,637 + +0.0 857,669 - +0.5 857,690 - -0.7 857,829 - -1.3
Or see this region's nucleotide sequence