Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07620 and PGA1_c07630 are separated by 169 nucleotides PGA1_c07630 and PGA1_c07640 are separated by 67 nucleotides PGA1_c07640 and PGA1_c07650 are separated by 175 nucleotides
PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587
_c07620
PGA1_c07630: PGA1_c07630 - Uncharacterized conserved protein, at 790,757 to 791,473
_c07630
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 790.542 kb on + strand at 790.569 kb on + strand at 790.606 kb on + strand at 790.614 kb on - strand at 790.616 kb on + strand at 790.624 kb on - strand at 790.624 kb on - strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.654 kb on + strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.662 kb on - strand at 790.803 kb on + strand at 790.808 kb on + strand at 790.808 kb on + strand at 790.910 kb on - strand, within PGA1_c07630 at 790.910 kb on - strand, within PGA1_c07630 at 790.939 kb on + strand, within PGA1_c07630 at 790.992 kb on + strand, within PGA1_c07630 at 791.038 kb on + strand, within PGA1_c07630 at 791.067 kb on + strand, within PGA1_c07630 at 791.111 kb on + strand, within PGA1_c07630 at 791.112 kb on + strand, within PGA1_c07630 at 791.242 kb on - strand, within PGA1_c07630 at 791.247 kb on - strand, within PGA1_c07630 at 791.301 kb on + strand, within PGA1_c07630 at 791.309 kb on - strand, within PGA1_c07630 at 791.359 kb on + strand, within PGA1_c07630 at 791.366 kb on + strand, within PGA1_c07630 at 791.372 kb on + strand, within PGA1_c07630 at 791.507 kb on + strand at 791.514 kb on + strand at 791.644 kb on + strand at 791.654 kb on + strand at 791.659 kb on + strand at 791.659 kb on + strand at 791.662 kb on - strand at 791.667 kb on - strand at 791.693 kb on + strand, within PGA1_c07640 at 791.722 kb on - strand, within PGA1_c07640 at 791.749 kb on + strand, within PGA1_c07640 at 791.759 kb on + strand, within PGA1_c07640 at 791.779 kb on - strand, within PGA1_c07640 at 791.816 kb on + strand, within PGA1_c07640 at 791.816 kb on + strand, within PGA1_c07640 at 791.841 kb on + strand, within PGA1_c07640 at 791.864 kb on + strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.867 kb on - strand, within PGA1_c07640 at 791.872 kb on - strand, within PGA1_c07640 at 791.877 kb on - strand, within PGA1_c07640 at 791.962 kb on - strand, within PGA1_c07640 at 791.963 kb on - strand, within PGA1_c07640 at 791.992 kb on + strand, within PGA1_c07640 at 791.992 kb on + strand, within PGA1_c07640 at 792.000 kb on - strand, within PGA1_c07640 at 792.000 kb on - strand, within PGA1_c07640 at 792.026 kb on + strand, within PGA1_c07640 at 792.041 kb on + strand, within PGA1_c07640 at 792.049 kb on + strand, within PGA1_c07640 at 792.086 kb on + strand, within PGA1_c07640 at 792.094 kb on - strand, within PGA1_c07640 at 792.100 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.114 kb on - strand, within PGA1_c07640 at 792.227 kb on + strand, within PGA1_c07640 at 792.261 kb on + strand, within PGA1_c07640 at 792.265 kb on - strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.374 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.413 kb on + strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.421 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.555 kb on + strand, within PGA1_c07640 at 792.563 kb on - strand, within PGA1_c07640 at 792.585 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.648 kb on + strand, within PGA1_c07640 at 792.765 kb on + strand at 792.810 kb on + strand at 792.831 kb on + strand at 792.831 kb on + strand at 792.839 kb on + strand at 792.844 kb on + strand at 792.844 kb on + strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.887 kb on + strand at 792.893 kb on - strand at 792.893 kb on - strand at 792.907 kb on - strand at 792.943 kb on - strand at 792.950 kb on + strand at 792.977 kb on + strand at 792.983 kb on - strand at 793.066 kb on + strand at 793.106 kb on + strand at 793.167 kb on + strand, within PGA1_c07650 at 793.167 kb on + strand, within PGA1_c07650 at 793.175 kb on - strand, within PGA1_c07650 at 793.177 kb on + strand, within PGA1_c07650 at 793.192 kb on - strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.228 kb on - strand, within PGA1_c07650 at 793.258 kb on - strand, within PGA1_c07650 at 793.335 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 790,542 + +0.2 790,569 + -1.1 790,606 + +0.6 790,614 - -1.8 790,616 + +0.2 790,624 - -2.5 790,624 - +0.0 790,654 + -0.1 790,654 + -1.4 790,654 + +0.4 790,654 + -0.1 790,654 + +0.6 790,662 - +0.4 790,662 - +1.1 790,662 - -0.5 790,662 - +0.7 790,662 - -0.1 790,803 + +0.6 790,808 + -1.7 790,808 + -3.3 790,910 - PGA1_c07630 0.21 +1.5 790,910 - PGA1_c07630 0.21 -2.0 790,939 + PGA1_c07630 0.25 -2.1 790,992 + PGA1_c07630 0.33 -0.2 791,038 + PGA1_c07630 0.39 -0.6 791,067 + PGA1_c07630 0.43 -1.1 791,111 + PGA1_c07630 0.49 -1.3 791,112 + PGA1_c07630 0.50 -0.2 791,242 - PGA1_c07630 0.68 +0.7 791,247 - PGA1_c07630 0.68 +0.0 791,301 + PGA1_c07630 0.76 -2.3 791,309 - PGA1_c07630 0.77 -1.5 791,359 + PGA1_c07630 0.84 -1.2 791,366 + PGA1_c07630 0.85 -0.5 791,372 + PGA1_c07630 0.86 -0.4 791,507 + +0.3 791,514 + -0.6 791,644 + -0.0 791,654 + +0.3 791,659 + -1.1 791,659 + -0.9 791,662 - +0.1 791,667 - +0.4 791,693 + PGA1_c07640 0.12 -0.3 791,722 - PGA1_c07640 0.14 +0.0 791,749 + PGA1_c07640 0.16 -0.0 791,759 + PGA1_c07640 0.17 -0.2 791,779 - PGA1_c07640 0.18 -0.7 791,816 + PGA1_c07640 0.21 -0.9 791,816 + PGA1_c07640 0.21 +1.4 791,841 + PGA1_c07640 0.23 -0.2 791,864 + PGA1_c07640 0.25 +0.5 791,867 - PGA1_c07640 0.25 -2.7 791,867 - PGA1_c07640 0.25 +0.4 791,867 - PGA1_c07640 0.25 -0.9 791,867 - PGA1_c07640 0.25 -0.5 791,872 - PGA1_c07640 0.26 -0.7 791,877 - PGA1_c07640 0.26 +0.8 791,962 - PGA1_c07640 0.33 +0.1 791,963 - PGA1_c07640 0.33 -0.5 791,992 + PGA1_c07640 0.35 +0.9 791,992 + PGA1_c07640 0.35 +0.6 792,000 - PGA1_c07640 0.35 +0.7 792,000 - PGA1_c07640 0.35 -0.7 792,026 + PGA1_c07640 0.38 -0.2 792,041 + PGA1_c07640 0.39 +0.9 792,049 + PGA1_c07640 0.39 +0.1 792,086 + PGA1_c07640 0.42 -0.4 792,094 - PGA1_c07640 0.43 -0.1 792,100 + PGA1_c07640 0.43 +1.1 792,106 + PGA1_c07640 0.44 -0.5 792,106 + PGA1_c07640 0.44 +2.4 792,106 + PGA1_c07640 0.44 -0.3 792,106 + PGA1_c07640 0.44 -0.1 792,106 + PGA1_c07640 0.44 -2.7 792,106 + PGA1_c07640 0.44 +0.4 792,106 + PGA1_c07640 0.44 +0.2 792,114 - PGA1_c07640 0.44 -1.2 792,227 + PGA1_c07640 0.53 -0.9 792,261 + PGA1_c07640 0.56 +0.6 792,265 - PGA1_c07640 0.56 +0.4 792,346 + PGA1_c07640 0.62 +0.4 792,346 + PGA1_c07640 0.62 +1.0 792,374 + PGA1_c07640 0.64 -2.1 792,412 + PGA1_c07640 0.67 +0.6 792,412 + PGA1_c07640 0.67 -0.6 792,413 + PGA1_c07640 0.67 -0.1 792,420 - PGA1_c07640 0.68 +0.2 792,420 - PGA1_c07640 0.68 -0.3 792,420 - PGA1_c07640 0.68 -0.6 792,420 - PGA1_c07640 0.68 +0.7 792,420 - PGA1_c07640 0.68 -1.7 792,420 - PGA1_c07640 0.68 +0.4 792,421 - PGA1_c07640 0.68 +1.0 792,487 - PGA1_c07640 0.73 +0.7 792,487 - PGA1_c07640 0.73 -0.2 792,487 - PGA1_c07640 0.73 +0.9 792,487 - PGA1_c07640 0.73 +1.6 792,555 + PGA1_c07640 0.78 -0.4 792,563 - PGA1_c07640 0.79 +0.1 792,585 - PGA1_c07640 0.81 -0.4 792,631 - PGA1_c07640 0.84 -0.6 792,631 - PGA1_c07640 0.84 +0.2 792,648 + PGA1_c07640 0.86 +0.3 792,765 + +0.0 792,810 + -2.0 792,831 + -0.1 792,831 + -0.3 792,839 + -0.0 792,844 + +1.1 792,844 + +0.7 792,852 - -0.6 792,852 - -1.4 792,852 - -0.2 792,852 - -1.0 792,887 + -0.3 792,893 - -0.9 792,893 - +1.3 792,907 - +1.7 792,943 - +0.3 792,950 + -1.4 792,977 + -1.6 792,983 - -1.6 793,066 + +1.4 793,106 + +2.0 793,167 + PGA1_c07650 0.16 -0.1 793,167 + PGA1_c07650 0.16 +0.4 793,175 - PGA1_c07650 0.17 +0.6 793,177 + PGA1_c07650 0.17 +0.1 793,192 - PGA1_c07650 0.18 +0.2 793,220 + PGA1_c07650 0.21 +0.0 793,220 + PGA1_c07650 0.21 +0.4 793,228 - PGA1_c07650 0.22 +0.4 793,258 - PGA1_c07650 0.25 +0.3 793,335 + PGA1_c07650 0.33 +0.0 793,419 + PGA1_c07650 0.41 +0.9 793,419 + PGA1_c07650 0.41 +0.8 793,419 + PGA1_c07650 0.41 +0.8 793,427 - PGA1_c07650 0.42 +0.2 793,446 - PGA1_c07650 0.44 +0.4 793,493 + PGA1_c07650 0.49 +0.5 793,503 + PGA1_c07650 0.50 +1.0 793,511 - PGA1_c07650 0.51 +0.2 793,511 - PGA1_c07650 0.51 -0.9 793,511 - PGA1_c07650 0.51 -0.8 793,511 - PGA1_c07650 0.51 +0.4 793,511 - PGA1_c07650 0.51 -0.3 793,511 - PGA1_c07650 0.51 -0.6 793,553 - PGA1_c07650 0.55 -0.1 793,566 + PGA1_c07650 0.56 -0.2 793,566 + PGA1_c07650 0.56 -0.9 793,566 + PGA1_c07650 0.56 +0.2 793,659 + PGA1_c07650 0.66 -0.6 793,703 + PGA1_c07650 0.70 +0.4 793,733 - PGA1_c07650 0.73 +1.2 793,745 + PGA1_c07650 0.74 +0.1 793,753 - PGA1_c07650 0.75 -0.4 793,755 + PGA1_c07650 0.75 -1.1 793,758 - PGA1_c07650 0.76 -0.3 793,801 + PGA1_c07650 0.80 +0.7
Or see this region's nucleotide sequence