Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06370

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06350 and PGA1_c06360 are separated by 241 nucleotidesPGA1_c06360 and PGA1_c06370 are separated by 219 nucleotidesPGA1_c06370 and PGA1_c06380 are separated by 183 nucleotides PGA1_c06350: PGA1_c06350 - putative MFS-type transporter, at 650,127 to 651,347 _c06350 PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065 _c06360 PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824 _c06370 PGA1_c06380: PGA1_c06380 - putative methylthioadenosine phosphorylase, at 653,008 to 654,021 _c06380 Position (kb) 652 653Strain fitness (log2 ratio) -3 -2 -1 0 1at 651.402 kb on - strandat 651.412 kb on - strandat 651.482 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.545 kb on + strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.636 kb on - strandat 651.685 kb on + strand, within PGA1_c06360at 651.693 kb on - strand, within PGA1_c06360at 651.693 kb on - strand, within PGA1_c06360at 651.698 kb on - strand, within PGA1_c06360at 651.709 kb on + strand, within PGA1_c06360at 651.719 kb on - strand, within PGA1_c06360at 651.763 kb on + strand, within PGA1_c06360at 651.771 kb on - strand, within PGA1_c06360at 651.868 kb on + strand, within PGA1_c06360at 651.899 kb on + strand, within PGA1_c06360at 651.907 kb on - strand, within PGA1_c06360at 651.908 kb on - strand, within PGA1_c06360at 651.923 kb on + strand, within PGA1_c06360at 651.926 kb on - strand, within PGA1_c06360at 651.926 kb on - strand, within PGA1_c06360at 651.993 kb on - strand, within PGA1_c06360at 652.042 kb on + strandat 652.042 kb on + strandat 652.050 kb on - strandat 652.068 kb on + strandat 652.080 kb on + strandat 652.088 kb on - strandat 652.101 kb on - strandat 652.113 kb on + strandat 652.121 kb on - strandat 652.121 kb on - strandat 652.121 kb on - strandat 652.300 kb on - strandat 652.306 kb on - strandat 652.317 kb on + strandat 652.341 kb on - strand, within PGA1_c06370at 652.424 kb on - strand, within PGA1_c06370at 652.424 kb on - strand, within PGA1_c06370at 652.508 kb on + strand, within PGA1_c06370at 652.595 kb on - strand, within PGA1_c06370at 652.629 kb on + strand, within PGA1_c06370at 652.775 kb on - strandat 652.900 kb on - strandat 652.962 kb on + strandat 652.964 kb on - strandat 653.006 kb on + strandat 653.008 kb on - strandat 653.086 kb on - strandat 653.137 kb on + strand, within PGA1_c06380at 653.251 kb on - strand, within PGA1_c06380at 653.311 kb on - strand, within PGA1_c06380at 653.337 kb on + strand, within PGA1_c06380at 653.345 kb on - strand, within PGA1_c06380at 653.500 kb on + strand, within PGA1_c06380at 653.617 kb on + strand, within PGA1_c06380at 653.643 kb on + strand, within PGA1_c06380at 653.651 kb on - strand, within PGA1_c06380at 653.651 kb on - strand, within PGA1_c06380at 653.764 kb on + strand, within PGA1_c06380at 653.767 kb on - strand, within PGA1_c06380at 653.778 kb on + strand, within PGA1_c06380at 653.783 kb on + strand, within PGA1_c06380

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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651,402 - -0.1
651,412 - -0.5
651,482 + -1.2
651,537 + -0.4
651,537 + +0.7
651,537 + -0.0
651,537 + +0.6
651,537 + -0.4
651,537 + +0.5
651,545 + +0.6
651,545 - -0.2
651,545 - +0.7
651,545 - +1.0
651,545 - -0.2
651,545 - -2.8
651,545 - -0.1
651,545 - -0.2
651,636 - -0.7
651,685 + PGA1_c06360 0.20 -0.4
651,693 - PGA1_c06360 0.22 -1.1
651,693 - PGA1_c06360 0.22 +0.2
651,698 - PGA1_c06360 0.23 -1.8
651,709 + PGA1_c06360 0.25 +0.0
651,719 - PGA1_c06360 0.27 +0.4
651,763 + PGA1_c06360 0.36 +0.9
651,771 - PGA1_c06360 0.38 +0.8
651,868 + PGA1_c06360 0.58 +0.4
651,899 + PGA1_c06360 0.65 -1.8
651,907 - PGA1_c06360 0.67 +0.1
651,908 - PGA1_c06360 0.67 -0.0
651,923 + PGA1_c06360 0.70 -2.7
651,926 - PGA1_c06360 0.71 +0.4
651,926 - PGA1_c06360 0.71 +0.5
651,993 - PGA1_c06360 0.85 +1.0
652,042 + -0.3
652,042 + -0.4
652,050 - +0.3
652,068 + -0.8
652,080 + -1.2
652,088 - -0.5
652,101 - -1.9
652,113 + +0.6
652,121 - -1.0
652,121 - +0.4
652,121 - +0.7
652,300 - +0.8
652,306 - -1.5
652,317 + +1.1
652,341 - PGA1_c06370 0.10 -0.0
652,424 - PGA1_c06370 0.26 -0.4
652,424 - PGA1_c06370 0.26 +0.5
652,508 + PGA1_c06370 0.41 -0.3
652,595 - PGA1_c06370 0.57 +0.3
652,629 + PGA1_c06370 0.64 -0.0
652,775 - +0.1
652,900 - -0.5
652,962 + +0.2
652,964 - +0.7
653,006 + +0.2
653,008 - -0.6
653,086 - -0.5
653,137 + PGA1_c06380 0.13 +0.3
653,251 - PGA1_c06380 0.24 +0.6
653,311 - PGA1_c06380 0.30 -0.5
653,337 + PGA1_c06380 0.32 +0.5
653,345 - PGA1_c06380 0.33 -0.9
653,500 + PGA1_c06380 0.49 +0.7
653,617 + PGA1_c06380 0.60 -0.3
653,643 + PGA1_c06380 0.63 +1.5
653,651 - PGA1_c06380 0.63 +0.8
653,651 - PGA1_c06380 0.63 -0.2
653,764 + PGA1_c06380 0.75 -0.3
653,767 - PGA1_c06380 0.75 -0.1
653,778 + PGA1_c06380 0.76 +1.0
653,783 + PGA1_c06380 0.76 -0.7

Or see this region's nucleotide sequence