Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34040 and PGA1_c34050 overlap by 25 nucleotides PGA1_c34050 and PGA1_c34060 are separated by 404 nucleotides
PGA1_c34040: PGA1_c34040 - thiamine transport system permease protein ThiP, at 3,567,119 to 3,568,675
_c34040
PGA1_c34050: PGA1_c34050 - thiamine-binding periplasmic protein ThiB, at 3,568,651 to 3,569,628
_c34050
PGA1_c34060: PGA1_c34060 - chorismate synthase AroC, at 3,570,033 to 3,571,139
_c34060
Position (kb)
3568
3569
3570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3567.723 kb on - strand, within PGA1_c34040 at 3567.757 kb on + strand, within PGA1_c34040 at 3567.772 kb on - strand, within PGA1_c34040 at 3567.875 kb on + strand, within PGA1_c34040 at 3567.875 kb on + strand, within PGA1_c34040 at 3567.883 kb on - strand, within PGA1_c34040 at 3567.883 kb on - strand, within PGA1_c34040 at 3567.883 kb on - strand, within PGA1_c34040 at 3567.883 kb on - strand, within PGA1_c34040 at 3567.892 kb on + strand, within PGA1_c34040 at 3567.900 kb on + strand, within PGA1_c34040 at 3567.918 kb on + strand, within PGA1_c34040 at 3567.957 kb on + strand, within PGA1_c34040 at 3567.957 kb on + strand, within PGA1_c34040 at 3567.957 kb on + strand, within PGA1_c34040 at 3567.965 kb on - strand, within PGA1_c34040 at 3567.965 kb on - strand, within PGA1_c34040 at 3567.977 kb on + strand, within PGA1_c34040 at 3567.985 kb on - strand, within PGA1_c34040 at 3567.985 kb on - strand, within PGA1_c34040 at 3568.018 kb on + strand, within PGA1_c34040 at 3568.026 kb on - strand, within PGA1_c34040 at 3568.026 kb on - strand, within PGA1_c34040 at 3568.029 kb on - strand, within PGA1_c34040 at 3568.034 kb on - strand, within PGA1_c34040 at 3568.060 kb on + strand, within PGA1_c34040 at 3568.153 kb on + strand, within PGA1_c34040 at 3568.155 kb on + strand, within PGA1_c34040 at 3568.167 kb on + strand, within PGA1_c34040 at 3568.167 kb on + strand, within PGA1_c34040 at 3568.171 kb on - strand, within PGA1_c34040 at 3568.186 kb on + strand, within PGA1_c34040 at 3568.270 kb on + strand, within PGA1_c34040 at 3568.278 kb on - strand, within PGA1_c34040 at 3568.278 kb on - strand, within PGA1_c34040 at 3568.278 kb on - strand, within PGA1_c34040 at 3568.287 kb on + strand, within PGA1_c34040 at 3568.292 kb on + strand, within PGA1_c34040 at 3568.293 kb on - strand, within PGA1_c34040 at 3568.303 kb on + strand, within PGA1_c34040 at 3568.308 kb on + strand, within PGA1_c34040 at 3568.308 kb on + strand, within PGA1_c34040 at 3568.316 kb on - strand, within PGA1_c34040 at 3568.349 kb on + strand, within PGA1_c34040 at 3568.488 kb on - strand, within PGA1_c34040 at 3568.497 kb on + strand, within PGA1_c34040 at 3568.497 kb on + strand, within PGA1_c34040 at 3568.513 kb on + strand, within PGA1_c34040 at 3568.528 kb on + strand at 3568.557 kb on - strand at 3568.557 kb on - strand at 3568.568 kb on - strand at 3568.583 kb on - strand at 3568.604 kb on + strand at 3568.612 kb on - strand at 3568.631 kb on + strand at 3568.631 kb on + strand at 3568.665 kb on - strand at 3568.683 kb on + strand at 3568.760 kb on + strand, within PGA1_c34050 at 3568.768 kb on - strand, within PGA1_c34050 at 3568.797 kb on + strand, within PGA1_c34050 at 3568.850 kb on - strand, within PGA1_c34050 at 3568.904 kb on + strand, within PGA1_c34050 at 3568.928 kb on + strand, within PGA1_c34050 at 3568.982 kb on - strand, within PGA1_c34050 at 3568.994 kb on + strand, within PGA1_c34050 at 3568.994 kb on + strand, within PGA1_c34050 at 3568.994 kb on + strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.002 kb on - strand, within PGA1_c34050 at 3569.029 kb on + strand, within PGA1_c34050 at 3569.034 kb on + strand, within PGA1_c34050 at 3569.132 kb on - strand, within PGA1_c34050 at 3569.151 kb on - strand, within PGA1_c34050 at 3569.151 kb on - strand, within PGA1_c34050 at 3569.154 kb on + strand, within PGA1_c34050 at 3569.162 kb on - strand, within PGA1_c34050 at 3569.195 kb on + strand, within PGA1_c34050 at 3569.203 kb on - strand, within PGA1_c34050 at 3569.266 kb on + strand, within PGA1_c34050 at 3569.266 kb on + strand, within PGA1_c34050 at 3569.274 kb on - strand, within PGA1_c34050 at 3569.274 kb on - strand, within PGA1_c34050 at 3569.296 kb on + strand, within PGA1_c34050 at 3569.305 kb on - strand, within PGA1_c34050 at 3569.313 kb on + strand, within PGA1_c34050 at 3569.383 kb on + strand, within PGA1_c34050 at 3569.428 kb on - strand, within PGA1_c34050 at 3569.456 kb on + strand, within PGA1_c34050 at 3569.456 kb on + strand, within PGA1_c34050 at 3569.464 kb on - strand, within PGA1_c34050 at 3569.583 kb on - strand at 3569.583 kb on - strand at 3569.601 kb on - strand at 3569.613 kb on + strand at 3569.614 kb on + strand at 3569.650 kb on + strand at 3569.658 kb on - strand at 3569.661 kb on + strand at 3569.688 kb on + strand at 3569.720 kb on - strand at 3569.738 kb on + strand at 3569.755 kb on + strand at 3569.762 kb on + strand at 3569.763 kb on - strand at 3569.800 kb on - strand at 3569.849 kb on + strand at 3569.849 kb on + strand at 3569.857 kb on - strand at 3569.857 kb on - strand at 3569.857 kb on - strand at 3569.880 kb on + strand at 3569.889 kb on - strand at 3569.952 kb on + strand at 3569.958 kb on - strand at 3569.979 kb on + strand at 3569.979 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 3,567,723 - PGA1_c34040 0.39 +0.3 3,567,757 + PGA1_c34040 0.41 +0.2 3,567,772 - PGA1_c34040 0.42 +1.2 3,567,875 + PGA1_c34040 0.49 -1.0 3,567,875 + PGA1_c34040 0.49 +0.8 3,567,883 - PGA1_c34040 0.49 -0.8 3,567,883 - PGA1_c34040 0.49 +0.1 3,567,883 - PGA1_c34040 0.49 +0.3 3,567,883 - PGA1_c34040 0.49 +0.2 3,567,892 + PGA1_c34040 0.50 +0.5 3,567,900 + PGA1_c34040 0.50 -0.1 3,567,918 + PGA1_c34040 0.51 -0.1 3,567,957 + PGA1_c34040 0.54 +1.2 3,567,957 + PGA1_c34040 0.54 +1.0 3,567,957 + PGA1_c34040 0.54 +1.0 3,567,965 - PGA1_c34040 0.54 -1.0 3,567,965 - PGA1_c34040 0.54 +0.7 3,567,977 + PGA1_c34040 0.55 +0.8 3,567,985 - PGA1_c34040 0.56 +0.6 3,567,985 - PGA1_c34040 0.56 +0.7 3,568,018 + PGA1_c34040 0.58 +0.8 3,568,026 - PGA1_c34040 0.58 +0.9 3,568,026 - PGA1_c34040 0.58 -1.0 3,568,029 - PGA1_c34040 0.58 +1.4 3,568,034 - PGA1_c34040 0.59 -0.1 3,568,060 + PGA1_c34040 0.60 -0.4 3,568,153 + PGA1_c34040 0.66 -0.1 3,568,155 + PGA1_c34040 0.67 -1.6 3,568,167 + PGA1_c34040 0.67 +1.0 3,568,167 + PGA1_c34040 0.67 -0.6 3,568,171 - PGA1_c34040 0.68 +1.0 3,568,186 + PGA1_c34040 0.69 -0.0 3,568,270 + PGA1_c34040 0.74 +0.0 3,568,278 - PGA1_c34040 0.74 +0.4 3,568,278 - PGA1_c34040 0.74 +0.9 3,568,278 - PGA1_c34040 0.74 +0.0 3,568,287 + PGA1_c34040 0.75 +1.2 3,568,292 + PGA1_c34040 0.75 +0.1 3,568,293 - PGA1_c34040 0.75 +0.7 3,568,303 + PGA1_c34040 0.76 +1.6 3,568,308 + PGA1_c34040 0.76 +0.5 3,568,308 + PGA1_c34040 0.76 +1.1 3,568,316 - PGA1_c34040 0.77 +0.6 3,568,349 + PGA1_c34040 0.79 -0.1 3,568,488 - PGA1_c34040 0.88 +0.3 3,568,497 + PGA1_c34040 0.89 +0.1 3,568,497 + PGA1_c34040 0.89 +1.5 3,568,513 + PGA1_c34040 0.90 +0.2 3,568,528 + +0.6 3,568,557 - +0.5 3,568,557 - -0.7 3,568,568 - +1.1 3,568,583 - -0.8 3,568,604 + -0.6 3,568,612 - +0.6 3,568,631 + -0.8 3,568,631 + +1.5 3,568,665 - +0.2 3,568,683 + +0.4 3,568,760 + PGA1_c34050 0.11 +1.8 3,568,768 - PGA1_c34050 0.12 +1.3 3,568,797 + PGA1_c34050 0.15 +0.9 3,568,850 - PGA1_c34050 0.20 +1.1 3,568,904 + PGA1_c34050 0.26 +0.7 3,568,928 + PGA1_c34050 0.28 -0.1 3,568,982 - PGA1_c34050 0.34 +0.3 3,568,994 + PGA1_c34050 0.35 +0.9 3,568,994 + PGA1_c34050 0.35 +0.7 3,568,994 + PGA1_c34050 0.35 -0.0 3,569,002 - PGA1_c34050 0.36 +0.4 3,569,002 - PGA1_c34050 0.36 +0.5 3,569,002 - PGA1_c34050 0.36 -0.5 3,569,002 - PGA1_c34050 0.36 -0.0 3,569,002 - PGA1_c34050 0.36 -0.1 3,569,002 - PGA1_c34050 0.36 +0.3 3,569,002 - PGA1_c34050 0.36 +0.9 3,569,029 + PGA1_c34050 0.39 +0.2 3,569,034 + PGA1_c34050 0.39 +1.7 3,569,132 - PGA1_c34050 0.49 +1.0 3,569,151 - PGA1_c34050 0.51 +0.6 3,569,151 - PGA1_c34050 0.51 +0.4 3,569,154 + PGA1_c34050 0.51 +0.5 3,569,162 - PGA1_c34050 0.52 +0.2 3,569,195 + PGA1_c34050 0.56 +0.5 3,569,203 - PGA1_c34050 0.56 -0.1 3,569,266 + PGA1_c34050 0.63 +1.2 3,569,266 + PGA1_c34050 0.63 -0.9 3,569,274 - PGA1_c34050 0.64 +0.5 3,569,274 - PGA1_c34050 0.64 +0.6 3,569,296 + PGA1_c34050 0.66 +0.6 3,569,305 - PGA1_c34050 0.67 +0.4 3,569,313 + PGA1_c34050 0.68 +1.7 3,569,383 + PGA1_c34050 0.75 +0.2 3,569,428 - PGA1_c34050 0.79 -1.0 3,569,456 + PGA1_c34050 0.82 -0.1 3,569,456 + PGA1_c34050 0.82 +0.1 3,569,464 - PGA1_c34050 0.83 +0.8 3,569,583 - +0.9 3,569,583 - +0.5 3,569,601 - +1.0 3,569,613 + +0.9 3,569,614 + +0.7 3,569,650 + +0.4 3,569,658 - +0.3 3,569,661 + -0.4 3,569,688 + +0.3 3,569,720 - +0.1 3,569,738 + -1.3 3,569,755 + +0.4 3,569,762 + +0.0 3,569,763 - -0.3 3,569,800 - -2.3 3,569,849 + -0.6 3,569,849 + -0.3 3,569,857 - -1.5 3,569,857 - +1.0 3,569,857 - +2.2 3,569,880 + +1.1 3,569,889 - -0.6 3,569,952 + +0.4 3,569,958 - +0.6 3,569,979 + +1.3 3,569,979 + +0.6
Or see this region's nucleotide sequence