Experiment: MoLS4 without Pyridoxine Hydrochloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0025 and tRNA-Ala are separated by 173 nucleotides tRNA-Ala and DVU0026 are separated by 364 nucleotides
DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873
DVU0025
DVU_tRNA-Ala-2: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 30,047 to 30,122
tRNA-Ala
DVU0026: DVU0026 - conserved hypothetical protein (TIGR), at 30,487 to 31,059
DVU0026
Position (kb) 30
31 Strain fitness (log2 ratio) -1
0
1
2 at 29.095 kb on + strand, within DVU0025 at 29.124 kb on + strand, within DVU0025 at 29.126 kb on - strand, within DVU0025 at 29.163 kb on - strand, within DVU0025 at 29.217 kb on + strand, within DVU0025 at 29.225 kb on - strand, within DVU0025 at 29.237 kb on + strand, within DVU0025 at 29.241 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.271 kb on + strand, within DVU0025 at 29.279 kb on - strand, within DVU0025 at 29.352 kb on + strand, within DVU0025 at 29.390 kb on - strand, within DVU0025 at 29.463 kb on + strand, within DVU0025 at 29.497 kb on + strand, within DVU0025 at 29.546 kb on + strand, within DVU0025 at 29.569 kb on - strand, within DVU0025 at 29.571 kb on + strand, within DVU0025 at 29.579 kb on + strand, within DVU0025 at 29.596 kb on + strand, within DVU0025 at 29.676 kb on + strand at 29.702 kb on + strand at 29.722 kb on - strand at 29.758 kb on - strand at 29.778 kb on - strand at 29.789 kb on + strand at 29.866 kb on - strand at 29.906 kb on - strand at 29.933 kb on - strand at 29.940 kb on + strand at 29.952 kb on - strand at 30.091 kb on + strand, within tRNA-Ala at 30.227 kb on + strand at 30.240 kb on - strand at 30.305 kb on + strand at 30.366 kb on - strand at 30.379 kb on + strand at 30.485 kb on - strand at 30.708 kb on + strand, within DVU0026 at 30.763 kb on - strand, within DVU0026 at 30.809 kb on - strand, within DVU0026 at 30.818 kb on + strand, within DVU0026 at 30.833 kb on + strand, within DVU0026 at 30.849 kb on - strand, within DVU0026 at 30.909 kb on - strand, within DVU0026 at 30.938 kb on + strand, within DVU0026 at 30.938 kb on + strand, within DVU0026 at 31.008 kb on + strand at 31.052 kb on - strand at 31.080 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Pyridoxine Hydrochloride remove 29,095 + DVU0025 0.64 +0.3 29,124 + DVU0025 0.65 -0.4 29,126 - DVU0025 0.65 -0.0 29,163 - DVU0025 0.67 -0.4 29,217 + DVU0025 0.70 -0.2 29,225 - DVU0025 0.70 +0.9 29,237 + DVU0025 0.71 +0.0 29,241 + DVU0025 0.71 +0.1 29,271 + DVU0025 0.72 -0.7 29,271 + DVU0025 0.72 +0.1 29,279 - DVU0025 0.72 -0.0 29,352 + DVU0025 0.76 -0.3 29,390 - DVU0025 0.78 +0.3 29,463 + DVU0025 0.81 -0.3 29,497 + DVU0025 0.83 -0.2 29,546 + DVU0025 0.85 +0.3 29,569 - DVU0025 0.86 +0.2 29,571 + DVU0025 0.86 -0.4 29,579 + DVU0025 0.86 -0.2 29,596 + DVU0025 0.87 -1.1 29,676 + -0.4 29,702 + -1.1 29,722 - +0.0 29,758 - +0.8 29,778 - -0.0 29,789 + -1.1 29,866 - -0.4 29,906 - -0.8 29,933 - -0.2 29,940 + -0.3 29,952 - +0.5 30,091 + tRNA-Ala DVU_tRNA-Ala-2 0.58 +1.0 30,227 + +0.1 30,240 - +0.5 30,305 + -1.3 30,366 - -0.2 30,379 + +0.4 30,485 - +1.0 30,708 + DVU0026 0.39 +0.0 30,763 - DVU0026 0.48 +2.0 30,809 - DVU0026 0.56 +0.7 30,818 + DVU0026 0.58 -0.9 30,833 + DVU0026 0.60 +0.2 30,849 - DVU0026 0.63 -0.3 30,909 - DVU0026 0.74 +1.0 30,938 + DVU0026 0.79 +0.1 30,938 + DVU0026 0.79 -0.5 31,008 + -0.1 31,052 - +0.2 31,080 + -0.8
Or see this region's nucleotide sequence