Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00680

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00670 and PGA1_262p00680 are separated by 108 nucleotidesPGA1_262p00680 and PGA1_262p00690 are separated by 161 nucleotides PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673 _262p00670 PGA1_262p00680: PGA1_262p00680 - Uncharacterized membrane protein, at 78,782 to 79,336 _262p00680 PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373 _262p00690 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3at 77.826 kb on + strand, within PGA1_262p00670at 77.932 kb on + strand, within PGA1_262p00670at 77.932 kb on + strand, within PGA1_262p00670at 77.940 kb on - strand, within PGA1_262p00670at 77.975 kb on - strand, within PGA1_262p00670at 77.977 kb on + strand, within PGA1_262p00670at 78.082 kb on - strand, within PGA1_262p00670at 78.082 kb on - strand, within PGA1_262p00670at 78.123 kb on - strand, within PGA1_262p00670at 78.167 kb on + strand, within PGA1_262p00670at 78.167 kb on + strand, within PGA1_262p00670at 78.175 kb on - strand, within PGA1_262p00670at 78.242 kb on - strand, within PGA1_262p00670at 78.242 kb on - strand, within PGA1_262p00670at 78.263 kb on + strand, within PGA1_262p00670at 78.263 kb on + strand, within PGA1_262p00670at 78.271 kb on - strand, within PGA1_262p00670at 78.366 kb on - strand, within PGA1_262p00670at 78.367 kb on - strand, within PGA1_262p00670at 78.431 kb on + strand, within PGA1_262p00670at 78.439 kb on - strand, within PGA1_262p00670at 78.498 kb on - strand, within PGA1_262p00670at 78.537 kb on - strand, within PGA1_262p00670at 78.825 kb on + strandat 78.830 kb on + strandat 78.838 kb on - strand, within PGA1_262p00680at 78.838 kb on - strand, within PGA1_262p00680at 79.096 kb on + strand, within PGA1_262p00680at 79.210 kb on - strand, within PGA1_262p00680at 79.229 kb on - strand, within PGA1_262p00680at 79.261 kb on - strand, within PGA1_262p00680at 79.279 kb on + strand, within PGA1_262p00680at 79.279 kb on + strand, within PGA1_262p00680at 79.349 kb on - strandat 79.451 kb on - strandat 79.493 kb on - strandat 79.514 kb on + strandat 79.514 kb on + strandat 79.539 kb on + strandat 79.602 kb on - strand, within PGA1_262p00690at 79.636 kb on - strand, within PGA1_262p00690at 79.638 kb on + strand, within PGA1_262p00690at 79.638 kb on + strand, within PGA1_262p00690at 79.641 kb on - strand, within PGA1_262p00690at 79.646 kb on - strand, within PGA1_262p00690at 79.688 kb on - strand, within PGA1_262p00690at 79.705 kb on - strand, within PGA1_262p00690at 79.751 kb on + strand, within PGA1_262p00690at 79.775 kb on + strand, within PGA1_262p00690at 79.775 kb on + strand, within PGA1_262p00690at 79.783 kb on - strand, within PGA1_262p00690at 79.822 kb on + strand, within PGA1_262p00690at 80.023 kb on + strand, within PGA1_262p00690at 80.116 kb on - strand, within PGA1_262p00690at 80.239 kb on - strand, within PGA1_262p00690at 80.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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77,826 + PGA1_262p00670 0.37 -0.2
77,932 + PGA1_262p00670 0.45 +0.8
77,932 + PGA1_262p00670 0.45 +0.2
77,940 - PGA1_262p00670 0.46 -0.5
77,975 - PGA1_262p00670 0.48 +0.8
77,977 + PGA1_262p00670 0.48 +0.8
78,082 - PGA1_262p00670 0.56 +0.7
78,082 - PGA1_262p00670 0.56 -0.5
78,123 - PGA1_262p00670 0.59 +0.3
78,167 + PGA1_262p00670 0.62 +0.3
78,167 + PGA1_262p00670 0.62 -0.1
78,175 - PGA1_262p00670 0.63 +0.7
78,242 - PGA1_262p00670 0.68 -0.1
78,242 - PGA1_262p00670 0.68 +0.3
78,263 + PGA1_262p00670 0.69 +1.6
78,263 + PGA1_262p00670 0.69 -1.2
78,271 - PGA1_262p00670 0.70 -0.8
78,366 - PGA1_262p00670 0.77 -0.5
78,367 - PGA1_262p00670 0.77 +2.4
78,431 + PGA1_262p00670 0.82 -1.7
78,439 - PGA1_262p00670 0.83 +0.2
78,498 - PGA1_262p00670 0.87 +0.1
78,537 - PGA1_262p00670 0.90 +0.5
78,825 + +0.9
78,830 + -0.2
78,838 - PGA1_262p00680 0.10 -0.7
78,838 - PGA1_262p00680 0.10 +1.5
79,096 + PGA1_262p00680 0.57 +0.4
79,210 - PGA1_262p00680 0.77 -1.1
79,229 - PGA1_262p00680 0.81 +2.1
79,261 - PGA1_262p00680 0.86 -2.2
79,279 + PGA1_262p00680 0.90 -0.6
79,279 + PGA1_262p00680 0.90 +1.1
79,349 - +0.7
79,451 - +3.0
79,493 - +0.3
79,514 + -2.2
79,514 + +1.1
79,539 + -0.9
79,602 - PGA1_262p00690 0.12 -0.7
79,636 - PGA1_262p00690 0.16 +1.2
79,638 + PGA1_262p00690 0.16 +0.2
79,638 + PGA1_262p00690 0.16 +0.1
79,641 - PGA1_262p00690 0.16 -0.3
79,646 - PGA1_262p00690 0.17 +0.1
79,688 - PGA1_262p00690 0.22 -0.8
79,705 - PGA1_262p00690 0.24 +1.5
79,751 + PGA1_262p00690 0.29 -0.4
79,775 + PGA1_262p00690 0.32 +0.7
79,775 + PGA1_262p00690 0.32 -0.6
79,783 - PGA1_262p00690 0.33 -0.7
79,822 + PGA1_262p00690 0.37 +0.2
80,023 + PGA1_262p00690 0.60 -0.9
80,116 - PGA1_262p00690 0.71 -0.8
80,239 - PGA1_262p00690 0.85 -0.7
80,334 - -1.1

Or see this region's nucleotide sequence