Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00790

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00780 and PGA1_c00790 are separated by 58 nucleotidesPGA1_c00790 and PGA1_c00800 are separated by 63 nucleotidesPGA1_c00800 and PGA1_c00810 are separated by 40 nucleotides PGA1_c00780: PGA1_c00780 - putative chromosome segregation protein SMC, at 75,090 to 78,545 _c00780 PGA1_c00790: PGA1_c00790 - hypothetical protein, at 78,604 to 79,071 _c00790 PGA1_c00800: PGA1_c00800 - hypothetical protein, at 79,135 to 79,524 _c00800 PGA1_c00810: PGA1_c00810 - putative lytic murein transglycosylase, at 79,565 to 80,737 _c00810 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2at 77.635 kb on - strand, within PGA1_c00780at 77.635 kb on - strand, within PGA1_c00780at 77.641 kb on + strand, within PGA1_c00780at 77.678 kb on - strand, within PGA1_c00780at 77.751 kb on - strand, within PGA1_c00780at 77.751 kb on - strand, within PGA1_c00780at 77.775 kb on + strand, within PGA1_c00780at 77.808 kb on + strand, within PGA1_c00780at 77.813 kb on + strand, within PGA1_c00780at 77.816 kb on - strand, within PGA1_c00780at 77.816 kb on - strand, within PGA1_c00780at 77.840 kb on - strand, within PGA1_c00780at 77.850 kb on - strand, within PGA1_c00780at 77.856 kb on + strand, within PGA1_c00780at 77.864 kb on - strand, within PGA1_c00780at 77.902 kb on - strand, within PGA1_c00780at 77.940 kb on - strand, within PGA1_c00780at 78.074 kb on + strand, within PGA1_c00780at 78.085 kb on + strand, within PGA1_c00780at 78.093 kb on - strand, within PGA1_c00780at 78.109 kb on + strand, within PGA1_c00780at 78.151 kb on + strand, within PGA1_c00780at 78.276 kb on + strandat 78.284 kb on - strandat 78.309 kb on + strandat 78.506 kb on - strandat 78.541 kb on + strandat 78.568 kb on + strandat 78.637 kb on - strandat 78.642 kb on - strandat 78.653 kb on + strand, within PGA1_c00790at 78.661 kb on - strand, within PGA1_c00790at 78.661 kb on - strand, within PGA1_c00790at 78.661 kb on - strand, within PGA1_c00790at 78.678 kb on + strand, within PGA1_c00790at 78.740 kb on + strand, within PGA1_c00790at 78.772 kb on + strand, within PGA1_c00790at 78.803 kb on + strand, within PGA1_c00790at 78.804 kb on + strand, within PGA1_c00790at 78.811 kb on - strand, within PGA1_c00790at 78.859 kb on - strand, within PGA1_c00790at 78.935 kb on - strand, within PGA1_c00790at 79.037 kb on - strandat 79.065 kb on + strandat 79.075 kb on + strandat 79.075 kb on + strandat 79.075 kb on + strandat 79.083 kb on - strandat 79.083 kb on - strandat 79.133 kb on + strandat 79.186 kb on + strand, within PGA1_c00800at 79.209 kb on + strand, within PGA1_c00800at 79.227 kb on - strand, within PGA1_c00800at 79.244 kb on - strand, within PGA1_c00800at 79.308 kb on + strand, within PGA1_c00800at 79.366 kb on + strand, within PGA1_c00800at 79.374 kb on - strand, within PGA1_c00800at 79.374 kb on - strand, within PGA1_c00800at 79.382 kb on - strand, within PGA1_c00800at 79.428 kb on + strand, within PGA1_c00800at 79.458 kb on + strand, within PGA1_c00800at 79.518 kb on + strandat 79.526 kb on - strandat 79.539 kb on + strandat 79.561 kb on - strandat 79.580 kb on - strandat 79.580 kb on - strandat 79.580 kb on - strandat 79.587 kb on + strandat 79.659 kb on + strandat 79.684 kb on + strand, within PGA1_c00810at 79.684 kb on + strand, within PGA1_c00810at 79.684 kb on + strand, within PGA1_c00810at 79.684 kb on + strand, within PGA1_c00810at 79.761 kb on + strand, within PGA1_c00810at 79.813 kb on + strand, within PGA1_c00810at 79.813 kb on + strand, within PGA1_c00810at 79.821 kb on - strand, within PGA1_c00810at 79.826 kb on + strand, within PGA1_c00810at 79.898 kb on - strand, within PGA1_c00810at 79.988 kb on + strand, within PGA1_c00810

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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77,635 - PGA1_c00780 0.74 +0.2
77,635 - PGA1_c00780 0.74 +0.8
77,641 + PGA1_c00780 0.74 -0.8
77,678 - PGA1_c00780 0.75 -0.1
77,751 - PGA1_c00780 0.77 +0.5
77,751 - PGA1_c00780 0.77 -0.7
77,775 + PGA1_c00780 0.78 +0.7
77,808 + PGA1_c00780 0.79 -0.5
77,813 + PGA1_c00780 0.79 +0.3
77,816 - PGA1_c00780 0.79 -0.3
77,816 - PGA1_c00780 0.79 +0.2
77,840 - PGA1_c00780 0.80 +0.8
77,850 - PGA1_c00780 0.80 +0.5
77,856 + PGA1_c00780 0.80 -0.6
77,864 - PGA1_c00780 0.80 -0.2
77,902 - PGA1_c00780 0.81 -0.1
77,940 - PGA1_c00780 0.82 -0.4
78,074 + PGA1_c00780 0.86 +1.5
78,085 + PGA1_c00780 0.87 -0.8
78,093 - PGA1_c00780 0.87 -0.6
78,109 + PGA1_c00780 0.87 +0.3
78,151 + PGA1_c00780 0.89 -0.3
78,276 + +0.1
78,284 - -0.7
78,309 + -0.8
78,506 - -0.6
78,541 + +0.5
78,568 + -0.1
78,637 - +2.1
78,642 - +0.2
78,653 + PGA1_c00790 0.10 -1.1
78,661 - PGA1_c00790 0.12 +0.7
78,661 - PGA1_c00790 0.12 +0.0
78,661 - PGA1_c00790 0.12 +0.5
78,678 + PGA1_c00790 0.16 -0.6
78,740 + PGA1_c00790 0.29 +1.5
78,772 + PGA1_c00790 0.36 -1.0
78,803 + PGA1_c00790 0.43 +0.5
78,804 + PGA1_c00790 0.43 -0.9
78,811 - PGA1_c00790 0.44 +0.1
78,859 - PGA1_c00790 0.54 +0.6
78,935 - PGA1_c00790 0.71 +0.0
79,037 - -0.9
79,065 + +1.3
79,075 + -1.0
79,075 + +0.3
79,075 + -1.3
79,083 - -0.8
79,083 - -1.8
79,133 + +0.9
79,186 + PGA1_c00800 0.13 -0.6
79,209 + PGA1_c00800 0.19 +0.0
79,227 - PGA1_c00800 0.24 +0.3
79,244 - PGA1_c00800 0.28 +1.1
79,308 + PGA1_c00800 0.44 -0.8
79,366 + PGA1_c00800 0.59 +0.1
79,374 - PGA1_c00800 0.61 +0.6
79,374 - PGA1_c00800 0.61 -0.8
79,382 - PGA1_c00800 0.63 +0.0
79,428 + PGA1_c00800 0.75 +0.1
79,458 + PGA1_c00800 0.83 +0.1
79,518 + +0.3
79,526 - +0.0
79,539 + +0.2
79,561 - +0.3
79,580 - +1.3
79,580 - +0.8
79,580 - -0.3
79,587 + +0.5
79,659 + +0.5
79,684 + PGA1_c00810 0.10 +0.0
79,684 + PGA1_c00810 0.10 -0.1
79,684 + PGA1_c00810 0.10 -0.6
79,684 + PGA1_c00810 0.10 -0.8
79,761 + PGA1_c00810 0.17 -0.8
79,813 + PGA1_c00810 0.21 -0.5
79,813 + PGA1_c00810 0.21 -0.9
79,821 - PGA1_c00810 0.22 -1.0
79,826 + PGA1_c00810 0.22 -0.5
79,898 - PGA1_c00810 0.28 -0.6
79,988 + PGA1_c00810 0.36 -1.5

Or see this region's nucleotide sequence