Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07650 and PGA1_c07660 are separated by 378 nucleotides PGA1_c07660 and PGA1_c07670 are separated by 438 nucleotides
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
PGA1_c07660: PGA1_c07660 - tRNA-Thr, at 794,377 to 794,452
_c07660
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
Position (kb) 794
795 Strain fitness (log2 ratio) -2
-1
0
1
2 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650 at 793.855 kb on - strand, within PGA1_c07650 at 793.864 kb on - strand, within PGA1_c07650 at 793.882 kb on + strand, within PGA1_c07650 at 793.885 kb on - strand, within PGA1_c07650 at 793.911 kb on + strand at 793.923 kb on - strand at 793.952 kb on + strand at 793.952 kb on + strand at 794.023 kb on - strand at 794.037 kb on - strand at 794.042 kb on - strand at 794.051 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.095 kb on + strand at 794.113 kb on + strand at 794.121 kb on - strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.252 kb on + strand at 794.253 kb on + strand at 794.552 kb on - strand at 794.568 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.646 kb on - strand at 794.652 kb on + strand at 794.662 kb on + strand at 794.665 kb on + strand at 794.695 kb on - strand at 794.731 kb on + strand at 794.752 kb on + strand at 794.760 kb on - strand at 794.804 kb on + strand at 794.804 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.857 kb on + strand at 794.857 kb on + strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.954 kb on - strand at 794.954 kb on - strand at 794.955 kb on + strand at 794.960 kb on + strand at 794.968 kb on - strand at 794.982 kb on + strand at 794.988 kb on + strand at 794.992 kb on + strand at 794.995 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 795.028 kb on + strand at 795.028 kb on + strand at 795.069 kb on - strand, within PGA1_c07670 at 795.099 kb on + strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.133 kb on - strand, within PGA1_c07670 at 795.196 kb on + strand, within PGA1_c07670 at 795.205 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.325 kb on + strand, within PGA1_c07670 at 795.346 kb on + strand, within PGA1_c07670 at 795.416 kb on + strand, within PGA1_c07670 at 795.421 kb on + strand, within PGA1_c07670 at 795.439 kb on - strand, within PGA1_c07670 at 795.447 kb on - strand, within PGA1_c07670
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 793,419 + PGA1_c07650 0.41 +1.1 793,419 + PGA1_c07650 0.41 -0.2 793,419 + PGA1_c07650 0.41 +0.9 793,427 - PGA1_c07650 0.42 +0.8 793,446 - PGA1_c07650 0.44 +1.1 793,493 + PGA1_c07650 0.49 +0.1 793,503 + PGA1_c07650 0.50 -0.7 793,511 - PGA1_c07650 0.51 +0.3 793,511 - PGA1_c07650 0.51 -0.4 793,511 - PGA1_c07650 0.51 -0.0 793,511 - PGA1_c07650 0.51 -0.5 793,511 - PGA1_c07650 0.51 +1.0 793,511 - PGA1_c07650 0.51 -1.0 793,553 - PGA1_c07650 0.55 +0.5 793,566 + PGA1_c07650 0.56 +0.3 793,566 + PGA1_c07650 0.56 -0.6 793,566 + PGA1_c07650 0.56 -0.3 793,659 + PGA1_c07650 0.66 +0.1 793,703 + PGA1_c07650 0.70 -1.3 793,733 - PGA1_c07650 0.73 -0.5 793,745 + PGA1_c07650 0.74 +0.0 793,753 - PGA1_c07650 0.75 +1.0 793,755 + PGA1_c07650 0.75 -1.4 793,758 - PGA1_c07650 0.76 +0.5 793,801 + PGA1_c07650 0.80 +1.1 793,855 - PGA1_c07650 0.85 -0.0 793,864 - PGA1_c07650 0.86 -0.4 793,882 + PGA1_c07650 0.88 +0.3 793,885 - PGA1_c07650 0.88 -0.2 793,911 + +0.5 793,923 - +1.9 793,952 + +0.3 793,952 + -0.2 794,023 - +0.9 794,037 - -0.1 794,042 - +1.3 794,051 + -1.3 794,056 + -0.7 794,056 + -0.4 794,056 + +0.6 794,095 + -1.4 794,113 + -1.3 794,121 - -1.1 794,149 + -0.5 794,149 + -0.5 794,149 + -0.8 794,149 + -0.3 794,149 + -0.6 794,149 + +0.2 794,157 - -0.6 794,157 - +0.3 794,157 - +0.1 794,157 - +0.7 794,157 - +0.5 794,157 - -0.2 794,157 - -0.9 794,157 - +1.1 794,157 - +0.1 794,252 + +0.2 794,253 + -0.9 794,552 - -0.5 794,568 + -2.7 794,638 + -0.1 794,638 + +0.2 794,638 + +1.4 794,638 + +0.3 794,638 + -0.4 794,646 - -0.8 794,652 + +0.5 794,662 + -1.9 794,665 + -0.4 794,695 - -1.4 794,731 + +0.9 794,752 + -0.2 794,760 - +0.1 794,804 + +1.0 794,804 + +0.5 794,835 + +0.4 794,835 + +0.7 794,835 + +0.4 794,835 + -0.6 794,835 + +1.0 794,835 + +1.5 794,835 + +1.2 794,835 + -0.4 794,843 - +0.2 794,843 - -2.6 794,843 - +0.4 794,843 - -0.3 794,843 - -0.4 794,843 - -0.4 794,843 - -0.9 794,857 + +0.7 794,857 + -0.2 794,865 - -1.9 794,865 - +0.8 794,865 - -0.2 794,865 - +0.3 794,865 - +0.3 794,954 - -0.3 794,954 - +0.7 794,955 + +0.0 794,960 + +0.2 794,968 - +0.3 794,982 + -1.5 794,988 + +1.1 794,992 + -1.3 794,995 - +0.7 794,996 - -1.1 794,996 - +0.3 794,996 - -0.5 795,028 + -1.1 795,028 + -0.3 795,069 - PGA1_c07670 0.10 +0.3 795,099 + PGA1_c07670 0.12 +1.6 795,105 - PGA1_c07670 0.12 +1.0 795,105 - PGA1_c07670 0.12 +0.2 795,133 - PGA1_c07670 0.14 +0.1 795,196 + PGA1_c07670 0.17 -1.3 795,205 - PGA1_c07670 0.18 +0.1 795,314 - PGA1_c07670 0.24 -1.3 795,314 - PGA1_c07670 0.24 +0.2 795,325 + PGA1_c07670 0.25 -0.0 795,346 + PGA1_c07670 0.26 -0.6 795,416 + PGA1_c07670 0.30 +0.8 795,421 + PGA1_c07670 0.30 +0.6 795,439 - PGA1_c07670 0.31 -0.0 795,447 - PGA1_c07670 0.32 +0.8
Or see this region's nucleotide sequence