Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04470

Experiment: Carbon source L-Citrulline 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c04450 and PGA1_c04460 are separated by 276 nucleotidesPGA1_c04460 and PGA1_c04470 are separated by 111 nucleotidesPGA1_c04470 and PGA1_c04480 are separated by 120 nucleotidesPGA1_c04480 and PGA1_c04490 are separated by 9 nucleotides PGA1_c04450: PGA1_c04450 - glutathione import ATP-binding protein GsiA, at 433,538 to 435,316 _c04450 PGA1_c04460: PGA1_c04460 - hypothetical protein, at 435,593 to 436,102 _c04460 PGA1_c04470: PGA1_c04470 - putative glutathione S-transferase, at 436,214 to 436,843 _c04470 PGA1_c04480: PGA1_c04480 - transcriptional regulator, TetR family, at 436,964 to 437,629 _c04480 PGA1_c04490: PGA1_c04490 - indolepyruvate oxidoreductase, at 437,639 to 441,061 _c04490 Position (kb) 436 437Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 435.225 kb on - strandat 435.256 kb on + strandat 435.302 kb on + strandat 435.327 kb on + strandat 435.337 kb on + strandat 435.384 kb on + strandat 435.384 kb on + strandat 435.394 kb on + strandat 435.394 kb on + strandat 435.394 kb on + strandat 435.457 kb on + strandat 435.548 kb on + strandat 435.604 kb on + strandat 435.612 kb on - strandat 435.612 kb on - strandat 435.612 kb on - strandat 435.612 kb on - strandat 435.644 kb on - strand, within PGA1_c04460at 435.724 kb on - strand, within PGA1_c04460at 435.762 kb on - strand, within PGA1_c04460at 435.798 kb on + strand, within PGA1_c04460at 435.805 kb on + strand, within PGA1_c04460at 435.811 kb on - strand, within PGA1_c04460at 435.811 kb on - strand, within PGA1_c04460at 435.811 kb on - strand, within PGA1_c04460at 435.896 kb on + strand, within PGA1_c04460at 435.897 kb on + strand, within PGA1_c04460at 435.904 kb on - strand, within PGA1_c04460at 435.904 kb on - strand, within PGA1_c04460at 435.911 kb on + strand, within PGA1_c04460at 435.911 kb on + strand, within PGA1_c04460at 435.911 kb on + strand, within PGA1_c04460at 435.911 kb on + strand, within PGA1_c04460at 435.919 kb on - strand, within PGA1_c04460at 435.965 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.008 kb on + strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.016 kb on - strand, within PGA1_c04460at 436.054 kb on + strandat 436.062 kb on - strandat 436.097 kb on - strandat 436.105 kb on - strandat 436.163 kb on + strandat 436.168 kb on + strandat 436.176 kb on - strandat 436.176 kb on - strandat 436.178 kb on + strandat 436.185 kb on + strandat 436.187 kb on + strandat 436.187 kb on - strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.198 kb on + strandat 436.228 kb on + strandat 436.236 kb on - strandat 436.236 kb on - strandat 436.280 kb on + strand, within PGA1_c04470at 436.288 kb on - strand, within PGA1_c04470at 436.317 kb on + strand, within PGA1_c04470at 436.320 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.355 kb on - strand, within PGA1_c04470at 436.392 kb on + strand, within PGA1_c04470at 436.408 kb on + strand, within PGA1_c04470at 436.444 kb on + strand, within PGA1_c04470at 436.444 kb on + strand, within PGA1_c04470at 436.444 kb on - strand, within PGA1_c04470at 436.452 kb on - strand, within PGA1_c04470at 436.462 kb on - strand, within PGA1_c04470at 436.472 kb on + strand, within PGA1_c04470at 436.489 kb on + strand, within PGA1_c04470at 436.490 kb on + strand, within PGA1_c04470at 436.490 kb on + strand, within PGA1_c04470at 436.498 kb on - strand, within PGA1_c04470at 436.525 kb on - strand, within PGA1_c04470at 436.565 kb on + strand, within PGA1_c04470at 436.702 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.706 kb on + strand, within PGA1_c04470at 436.707 kb on + strand, within PGA1_c04470at 436.707 kb on + strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.714 kb on - strand, within PGA1_c04470at 436.715 kb on - strand, within PGA1_c04470at 436.768 kb on - strand, within PGA1_c04470at 436.775 kb on + strand, within PGA1_c04470at 436.781 kb on - strandat 436.788 kb on + strandat 436.788 kb on - strandat 436.830 kb on + strandat 436.830 kb on + strandat 436.830 kb on + strandat 436.838 kb on - strandat 436.856 kb on + strandat 436.874 kb on + strandat 436.874 kb on + strandat 436.880 kb on - strandat 436.901 kb on + strandat 436.924 kb on + strandat 436.929 kb on + strandat 436.978 kb on - strandat 437.012 kb on - strandat 437.031 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.090 kb on - strand, within PGA1_c04480at 437.091 kb on - strand, within PGA1_c04480at 437.092 kb on + strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.100 kb on - strand, within PGA1_c04480at 437.104 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.183 kb on + strand, within PGA1_c04480at 437.193 kb on + strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.201 kb on - strand, within PGA1_c04480at 437.206 kb on - strand, within PGA1_c04480at 437.206 kb on - strand, within PGA1_c04480at 437.243 kb on + strand, within PGA1_c04480at 437.346 kb on + strand, within PGA1_c04480at 437.385 kb on - strand, within PGA1_c04480at 437.455 kb on + strand, within PGA1_c04480at 437.477 kb on - strand, within PGA1_c04480at 437.488 kb on + strand, within PGA1_c04480at 437.498 kb on + strand, within PGA1_c04480at 437.499 kb on + strand, within PGA1_c04480at 437.511 kb on + strand, within PGA1_c04480at 437.561 kb on + strand, within PGA1_c04480at 437.582 kb on - strandat 437.582 kb on - strandat 437.623 kb on + strandat 437.670 kb on + strandat 437.670 kb on + strandat 437.678 kb on + strandat 437.678 kb on - strandat 437.712 kb on - strandat 437.740 kb on - strandat 437.764 kb on + strandat 437.764 kb on + strandat 437.772 kb on - strandat 437.772 kb on - strandat 437.772 kb on - strandat 437.774 kb on + strandat 437.782 kb on - strandat 437.799 kb on + strandat 437.807 kb on - strandat 437.822 kb on - strandat 437.825 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
remove
435,225 - +0.7
435,256 + -1.8
435,302 + +0.3
435,327 + -0.3
435,337 + +0.1
435,384 + +0.9
435,384 + -0.1
435,394 + -0.3
435,394 + -0.7
435,394 + -1.5
435,457 + -0.9
435,548 + +0.7
435,604 + -0.9
435,612 - -0.1
435,612 - +0.1
435,612 - -1.2
435,612 - +0.1
435,644 - PGA1_c04460 0.10 +0.1
435,724 - PGA1_c04460 0.26 +0.9
435,762 - PGA1_c04460 0.33 -0.9
435,798 + PGA1_c04460 0.40 -0.3
435,805 + PGA1_c04460 0.42 +0.4
435,811 - PGA1_c04460 0.43 +1.4
435,811 - PGA1_c04460 0.43 +0.3
435,811 - PGA1_c04460 0.43 -0.6
435,896 + PGA1_c04460 0.59 +0.6
435,897 + PGA1_c04460 0.60 +2.0
435,904 - PGA1_c04460 0.61 +0.9
435,904 - PGA1_c04460 0.61 +0.9
435,911 + PGA1_c04460 0.62 +1.8
435,911 + PGA1_c04460 0.62 +0.5
435,911 + PGA1_c04460 0.62 -0.5
435,911 + PGA1_c04460 0.62 -0.3
435,919 - PGA1_c04460 0.64 -1.3
435,965 + PGA1_c04460 0.73 -0.8
436,008 + PGA1_c04460 0.81 +1.6
436,008 + PGA1_c04460 0.81 -1.2
436,008 + PGA1_c04460 0.81 -2.6
436,008 + PGA1_c04460 0.81 -0.7
436,008 + PGA1_c04460 0.81 -1.2
436,008 + PGA1_c04460 0.81 +1.2
436,008 + PGA1_c04460 0.81 +0.1
436,016 - PGA1_c04460 0.83 -0.4
436,016 - PGA1_c04460 0.83 +1.3
436,016 - PGA1_c04460 0.83 -0.8
436,054 + +0.3
436,062 - +0.4
436,097 - +0.0
436,105 - -0.2
436,163 + -0.4
436,168 + +0.4
436,176 - -0.7
436,176 - -0.1
436,178 + -0.8
436,185 + +0.9
436,187 + +0.2
436,187 - +0.2
436,198 + -0.4
436,198 + -0.7
436,198 + +1.2
436,198 + -0.8
436,198 + -2.5
436,228 + -1.9
436,236 - +0.7
436,236 - -1.5
436,280 + PGA1_c04470 0.10 -0.7
436,288 - PGA1_c04470 0.12 +0.6
436,317 + PGA1_c04470 0.16 +1.3
436,320 - PGA1_c04470 0.17 +0.9
436,355 - PGA1_c04470 0.22 +0.7
436,355 - PGA1_c04470 0.22 +1.2
436,355 - PGA1_c04470 0.22 +0.7
436,392 + PGA1_c04470 0.28 +0.1
436,408 + PGA1_c04470 0.31 -3.1
436,444 + PGA1_c04470 0.37 -0.5
436,444 + PGA1_c04470 0.37 -0.4
436,444 - PGA1_c04470 0.37 -1.2
436,452 - PGA1_c04470 0.38 +1.5
436,462 - PGA1_c04470 0.39 +0.8
436,472 + PGA1_c04470 0.41 +0.6
436,489 + PGA1_c04470 0.44 -0.2
436,490 + PGA1_c04470 0.44 -0.9
436,490 + PGA1_c04470 0.44 +0.3
436,498 - PGA1_c04470 0.45 +2.1
436,525 - PGA1_c04470 0.49 +0.9
436,565 + PGA1_c04470 0.56 -0.3
436,702 + PGA1_c04470 0.77 +1.0
436,706 + PGA1_c04470 0.78 +0.4
436,706 + PGA1_c04470 0.78 +0.4
436,706 + PGA1_c04470 0.78 -0.5
436,706 + PGA1_c04470 0.78 -0.6
436,706 + PGA1_c04470 0.78 +0.6
436,707 + PGA1_c04470 0.78 -0.1
436,707 + PGA1_c04470 0.78 +1.5
436,714 - PGA1_c04470 0.79 +0.4
436,714 - PGA1_c04470 0.79 +0.8
436,714 - PGA1_c04470 0.79 -0.1
436,714 - PGA1_c04470 0.79 +1.3
436,714 - PGA1_c04470 0.79 -0.8
436,714 - PGA1_c04470 0.79 +0.2
436,714 - PGA1_c04470 0.79 -1.4
436,714 - PGA1_c04470 0.79 +0.5
436,714 - PGA1_c04470 0.79 +0.8
436,714 - PGA1_c04470 0.79 +0.7
436,715 - PGA1_c04470 0.80 -0.1
436,768 - PGA1_c04470 0.88 +1.2
436,775 + PGA1_c04470 0.89 -0.7
436,781 - +1.0
436,788 + -0.4
436,788 - +0.4
436,830 + -0.1
436,830 + +0.7
436,830 + +0.0
436,838 - -0.2
436,856 + +0.4
436,874 + +0.6
436,874 + -0.1
436,880 - +0.4
436,901 + -0.1
436,924 + +0.3
436,929 + +0.3
436,978 - -0.3
437,012 - +0.5
437,031 - PGA1_c04480 0.10 +0.9
437,090 - PGA1_c04480 0.19 -0.5
437,090 - PGA1_c04480 0.19 -0.0
437,090 - PGA1_c04480 0.19 -0.2
437,091 - PGA1_c04480 0.19 +0.5
437,092 + PGA1_c04480 0.19 -0.9
437,100 - PGA1_c04480 0.20 +0.5
437,100 - PGA1_c04480 0.20 -0.5
437,100 - PGA1_c04480 0.20 -2.0
437,104 + PGA1_c04480 0.21 -0.7
437,183 + PGA1_c04480 0.33 -1.7
437,183 + PGA1_c04480 0.33 -1.9
437,183 + PGA1_c04480 0.33 -0.3
437,193 + PGA1_c04480 0.34 +1.1
437,201 - PGA1_c04480 0.36 -0.4
437,201 - PGA1_c04480 0.36 -0.4
437,201 - PGA1_c04480 0.36 +0.7
437,201 - PGA1_c04480 0.36 +1.3
437,201 - PGA1_c04480 0.36 -0.7
437,206 - PGA1_c04480 0.36 +0.6
437,206 - PGA1_c04480 0.36 +0.5
437,243 + PGA1_c04480 0.42 -0.1
437,346 + PGA1_c04480 0.57 +0.1
437,385 - PGA1_c04480 0.63 +0.2
437,455 + PGA1_c04480 0.74 -0.6
437,477 - PGA1_c04480 0.77 -0.2
437,488 + PGA1_c04480 0.79 -0.3
437,498 + PGA1_c04480 0.80 +0.5
437,499 + PGA1_c04480 0.80 -1.5
437,511 + PGA1_c04480 0.82 -1.4
437,561 + PGA1_c04480 0.90 -1.5
437,582 - -0.6
437,582 - +0.2
437,623 + +0.7
437,670 + -0.6
437,670 + +0.4
437,678 + +0.4
437,678 - +0.3
437,712 - +0.0
437,740 - -0.5
437,764 + +0.6
437,764 + +0.2
437,772 - -0.5
437,772 - -0.8
437,772 - -0.6
437,774 + +0.6
437,782 - +1.2
437,799 + +0.6
437,807 - -0.3
437,822 - +0.2
437,825 + +0.1

Or see this region's nucleotide sequence