Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01480 and PGA1_262p01490 are separated by 32 nucleotides PGA1_262p01490 and PGA1_262p01500 overlap by 8 nucleotides PGA1_262p01500 and PGA1_262p01510 overlap by 4 nucleotides PGA1_262p01510 and PGA1_262p01520 are separated by 12 nucleotides
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
PGA1_262p01490: PGA1_262p01490 - putative sarcosine oxidase, gamma subunit, at 162,569 to 163,132
_262p01490
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
PGA1_262p01510: PGA1_262p01510 - sarcosine oxidase, delta subunit, at 166,088 to 166,396
_262p01510
PGA1_262p01520: PGA1_262p01520 - sarcosine oxidase 3 subunit beta, at 166,409 to 167,659
_262p01520
Position (kb) 163
164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480 at 162.588 kb on + strand at 162.588 kb on + strand at 162.694 kb on - strand, within PGA1_262p01490 at 162.740 kb on + strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 163.116 kb on - strand at 163.136 kb on + strand at 163.246 kb on + strand at 163.302 kb on + strand at 163.310 kb on - strand at 163.436 kb on - strand, within PGA1_262p01500 at 163.576 kb on - strand, within PGA1_262p01500 at 163.592 kb on - strand, within PGA1_262p01500 at 163.729 kb on + strand, within PGA1_262p01500 at 163.731 kb on - strand, within PGA1_262p01500 at 163.827 kb on + strand, within PGA1_262p01500 at 163.848 kb on + strand, within PGA1_262p01500 at 163.885 kb on + strand, within PGA1_262p01500 at 164.021 kb on + strand, within PGA1_262p01500 at 164.404 kb on - strand, within PGA1_262p01500 at 164.425 kb on - strand, within PGA1_262p01500 at 164.493 kb on + strand, within PGA1_262p01500 at 164.542 kb on - strand, within PGA1_262p01500 at 164.692 kb on - strand, within PGA1_262p01500 at 164.774 kb on + strand, within PGA1_262p01500 at 164.787 kb on - strand, within PGA1_262p01500 at 164.816 kb on - strand, within PGA1_262p01500 at 164.816 kb on - strand, within PGA1_262p01500 at 164.823 kb on + strand, within PGA1_262p01500 at 164.984 kb on - strand, within PGA1_262p01500 at 165.038 kb on + strand, within PGA1_262p01500 at 165.429 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.905 kb on - strand at 165.952 kb on + strand at 165.952 kb on + strand at 166.158 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.283 kb on - strand, within PGA1_262p01510 at 166.402 kb on - strand at 166.554 kb on + strand, within PGA1_262p01520 at 166.554 kb on + strand, within PGA1_262p01520 at 166.758 kb on + strand, within PGA1_262p01520 at 166.924 kb on - strand, within PGA1_262p01520 at 166.947 kb on - strand, within PGA1_262p01520 at 166.972 kb on + strand, within PGA1_262p01520 at 167.015 kb on - strand, within PGA1_262p01520
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 162,267 - PGA1_262p01480 0.73 +0.0 162,312 - PGA1_262p01480 0.78 +0.3 162,317 - PGA1_262p01480 0.78 +3.3 162,588 + -1.5 162,588 + +0.2 162,694 - PGA1_262p01490 0.22 +0.7 162,740 + PGA1_262p01490 0.30 +0.2 162,917 - PGA1_262p01490 0.62 +0.7 162,917 - PGA1_262p01490 0.62 -1.6 163,116 - +0.5 163,136 + +0.5 163,246 + -2.1 163,302 + +1.2 163,310 - -0.9 163,436 - PGA1_262p01500 0.10 +0.4 163,576 - PGA1_262p01500 0.15 -1.2 163,592 - PGA1_262p01500 0.16 +0.4 163,729 + PGA1_262p01500 0.20 -0.3 163,731 - PGA1_262p01500 0.20 -0.2 163,827 + PGA1_262p01500 0.24 -0.1 163,848 + PGA1_262p01500 0.24 -1.0 163,885 + PGA1_262p01500 0.26 +1.3 164,021 + PGA1_262p01500 0.30 +0.3 164,404 - PGA1_262p01500 0.43 +0.7 164,425 - PGA1_262p01500 0.44 -1.1 164,493 + PGA1_262p01500 0.46 -0.3 164,542 - PGA1_262p01500 0.48 -0.8 164,692 - PGA1_262p01500 0.53 -1.7 164,774 + PGA1_262p01500 0.56 +0.1 164,787 - PGA1_262p01500 0.56 -0.8 164,816 - PGA1_262p01500 0.57 -0.7 164,816 - PGA1_262p01500 0.57 +0.9 164,823 + PGA1_262p01500 0.57 -1.3 164,984 - PGA1_262p01500 0.63 -1.1 165,038 + PGA1_262p01500 0.64 -2.6 165,429 + PGA1_262p01500 0.78 -0.5 165,690 + PGA1_262p01500 0.86 -0.3 165,690 + PGA1_262p01500 0.86 +0.7 165,698 - PGA1_262p01500 0.87 -0.9 165,698 - PGA1_262p01500 0.87 +0.8 165,905 - +0.2 165,952 + +0.8 165,952 + +0.2 166,158 - PGA1_262p01510 0.23 +0.5 166,200 - PGA1_262p01510 0.36 +0.5 166,200 - PGA1_262p01510 0.36 +0.3 166,283 - PGA1_262p01510 0.63 +0.7 166,402 - -0.8 166,554 + PGA1_262p01520 0.12 +0.2 166,554 + PGA1_262p01520 0.12 -0.3 166,758 + PGA1_262p01520 0.28 -0.3 166,924 - PGA1_262p01520 0.41 +0.2 166,947 - PGA1_262p01520 0.43 -0.5 166,972 + PGA1_262p01520 0.45 +1.0 167,015 - PGA1_262p01520 0.48 -1.2
Or see this region's nucleotide sequence