Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00220 and PGA1_262p00230 overlap by 4 nucleotides PGA1_262p00230 and PGA1_262p00240 are separated by 126 nucleotides PGA1_262p00240 and PGA1_262p00250 are separated by 41 nucleotides PGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides
PGA1_262p00220: PGA1_262p00220 - putative mandelate racemase/muconate lactonizing enzyme, at 26,417 to 27,592
_262p00220
PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073
_262p00230
PGA1_262p00240: PGA1_262p00240 - Protein of unknown function (DUF1289)., at 29,200 to 29,445
_262p00240
PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960
_262p00250
PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510
_262p00260
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.594 kb on + strand, within PGA1_262p00220 at 26.629 kb on + strand, within PGA1_262p00220 at 26.655 kb on - strand, within PGA1_262p00220 at 26.826 kb on - strand, within PGA1_262p00220 at 26.928 kb on - strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.123 kb on - strand, within PGA1_262p00220 at 27.144 kb on + strand, within PGA1_262p00220 at 27.159 kb on - strand, within PGA1_262p00220 at 27.193 kb on + strand, within PGA1_262p00220 at 27.251 kb on - strand, within PGA1_262p00220 at 27.333 kb on - strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.398 kb on - strand, within PGA1_262p00220 at 27.400 kb on + strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.523 kb on - strand at 27.530 kb on - strand at 27.563 kb on + strand at 27.576 kb on - strand at 27.676 kb on + strand at 27.730 kb on + strand at 28.180 kb on + strand, within PGA1_262p00230 at 28.312 kb on + strand, within PGA1_262p00230 at 28.334 kb on + strand, within PGA1_262p00230 at 28.336 kb on - strand, within PGA1_262p00230 at 28.352 kb on + strand, within PGA1_262p00230 at 28.366 kb on + strand, within PGA1_262p00230 at 28.373 kb on + strand, within PGA1_262p00230 at 28.438 kb on - strand, within PGA1_262p00230 at 28.639 kb on + strand, within PGA1_262p00230 at 28.698 kb on - strand, within PGA1_262p00230 at 28.743 kb on + strand, within PGA1_262p00230 at 28.818 kb on + strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.942 kb on + strand at 28.943 kb on - strand at 28.964 kb on + strand at 29.088 kb on - strand at 29.153 kb on - strand at 29.174 kb on - strand at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.250 kb on + strand, within PGA1_262p00240 at 29.348 kb on + strand, within PGA1_262p00240 at 29.380 kb on + strand, within PGA1_262p00240 at 29.484 kb on + strand at 29.484 kb on + strand at 29.484 kb on + strand at 29.492 kb on - strand at 29.492 kb on - strand at 29.632 kb on + strand, within PGA1_262p00250 at 29.733 kb on + strand, within PGA1_262p00250 at 29.897 kb on + strand, within PGA1_262p00250 at 29.901 kb on - strand, within PGA1_262p00250 at 29.906 kb on - strand, within PGA1_262p00250 at 29.954 kb on + strand at 30.013 kb on + strand at 30.022 kb on - strand at 30.032 kb on - strand at 30.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 26,594 + PGA1_262p00220 0.15 -0.6 26,629 + PGA1_262p00220 0.18 +0.4 26,655 - PGA1_262p00220 0.20 -1.1 26,826 - PGA1_262p00220 0.35 -0.3 26,928 - PGA1_262p00220 0.43 +0.1 27,002 + PGA1_262p00220 0.50 -0.9 27,002 + PGA1_262p00220 0.50 -0.5 27,010 - PGA1_262p00220 0.50 -0.0 27,010 - PGA1_262p00220 0.50 -0.0 27,010 - PGA1_262p00220 0.50 -0.7 27,010 - PGA1_262p00220 0.50 -0.3 27,123 - PGA1_262p00220 0.60 -1.3 27,144 + PGA1_262p00220 0.62 -0.7 27,159 - PGA1_262p00220 0.63 +1.0 27,193 + PGA1_262p00220 0.66 -0.7 27,251 - PGA1_262p00220 0.71 +2.0 27,333 - PGA1_262p00220 0.78 +0.1 27,390 + PGA1_262p00220 0.83 +0.2 27,390 + PGA1_262p00220 0.83 -2.5 27,390 + PGA1_262p00220 0.83 -0.6 27,390 + PGA1_262p00220 0.83 +0.2 27,398 - PGA1_262p00220 0.83 -1.6 27,400 + PGA1_262p00220 0.84 -1.5 27,419 - PGA1_262p00220 0.85 -0.3 27,419 - PGA1_262p00220 0.85 -1.1 27,447 - PGA1_262p00220 0.88 +1.7 27,447 - PGA1_262p00220 0.88 -0.7 27,523 - -1.4 27,530 - -0.5 27,563 + +0.4 27,576 - +0.3 27,676 + -0.0 27,730 + -0.1 28,180 + PGA1_262p00230 0.40 -0.6 28,312 + PGA1_262p00230 0.49 -1.7 28,334 + PGA1_262p00230 0.50 +0.0 28,336 - PGA1_262p00230 0.50 -0.1 28,352 + PGA1_262p00230 0.51 +0.2 28,366 + PGA1_262p00230 0.52 +0.3 28,373 + PGA1_262p00230 0.53 +0.0 28,438 - PGA1_262p00230 0.57 +0.0 28,639 + PGA1_262p00230 0.71 -0.4 28,698 - PGA1_262p00230 0.75 +0.2 28,743 + PGA1_262p00230 0.78 -0.8 28,818 + PGA1_262p00230 0.83 +0.2 28,913 - PGA1_262p00230 0.89 +0.9 28,913 - PGA1_262p00230 0.89 -0.4 28,942 + +1.4 28,943 - +0.3 28,964 + -0.9 29,088 - +0.5 29,153 - +0.3 29,174 - -0.1 29,230 - PGA1_262p00240 0.12 -0.2 29,230 - PGA1_262p00240 0.12 -0.3 29,230 - PGA1_262p00240 0.12 -0.5 29,250 + PGA1_262p00240 0.20 +0.5 29,348 + PGA1_262p00240 0.60 -1.6 29,380 + PGA1_262p00240 0.73 +0.3 29,484 + -0.5 29,484 + +0.6 29,484 + -1.2 29,492 - -2.6 29,492 - +0.3 29,632 + PGA1_262p00250 0.31 +0.2 29,733 + PGA1_262p00250 0.52 +0.8 29,897 + PGA1_262p00250 0.86 +1.3 29,901 - PGA1_262p00250 0.87 -0.1 29,906 - PGA1_262p00250 0.88 +0.4 29,954 + -0.6 30,013 + -1.2 30,022 - -0.9 30,032 - -1.0 30,047 + +0.5
Or see this region's nucleotide sequence