Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00210 and PGA1_262p00220 overlap by 4 nucleotides PGA1_262p00220 and PGA1_262p00230 overlap by 4 nucleotides
PGA1_262p00210: PGA1_262p00210 - alcohol dehydrogenase AlkJ, at 24,762 to 26,420
_262p00210
PGA1_262p00220: PGA1_262p00220 - putative mandelate racemase/muconate lactonizing enzyme, at 26,417 to 27,592
_262p00220
PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073
_262p00230
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.450 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.672 kb on - strand, within PGA1_262p00210 at 25.677 kb on - strand, within PGA1_262p00210 at 25.716 kb on + strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.783 kb on - strand, within PGA1_262p00210 at 25.783 kb on - strand, within PGA1_262p00210 at 25.864 kb on - strand, within PGA1_262p00210 at 25.875 kb on + strand, within PGA1_262p00210 at 26.011 kb on + strand, within PGA1_262p00210 at 26.078 kb on + strand, within PGA1_262p00210 at 26.078 kb on + strand, within PGA1_262p00210 at 26.163 kb on - strand, within PGA1_262p00210 at 26.308 kb on + strand at 26.372 kb on - strand at 26.411 kb on + strand at 26.455 kb on - strand at 26.544 kb on + strand, within PGA1_262p00220 at 26.594 kb on + strand, within PGA1_262p00220 at 26.629 kb on + strand, within PGA1_262p00220 at 26.655 kb on - strand, within PGA1_262p00220 at 26.826 kb on - strand, within PGA1_262p00220 at 26.928 kb on - strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.123 kb on - strand, within PGA1_262p00220 at 27.144 kb on + strand, within PGA1_262p00220 at 27.159 kb on - strand, within PGA1_262p00220 at 27.193 kb on + strand, within PGA1_262p00220 at 27.251 kb on - strand, within PGA1_262p00220 at 27.333 kb on - strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.398 kb on - strand, within PGA1_262p00220 at 27.400 kb on + strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.523 kb on - strand at 27.530 kb on - strand at 27.563 kb on + strand at 27.576 kb on - strand at 27.676 kb on + strand at 27.730 kb on + strand at 28.180 kb on + strand, within PGA1_262p00230 at 28.312 kb on + strand, within PGA1_262p00230 at 28.334 kb on + strand, within PGA1_262p00230 at 28.336 kb on - strand, within PGA1_262p00230 at 28.352 kb on + strand, within PGA1_262p00230 at 28.366 kb on + strand, within PGA1_262p00230 at 28.373 kb on + strand, within PGA1_262p00230 at 28.438 kb on - strand, within PGA1_262p00230
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 25,450 + PGA1_262p00210 0.41 +0.9 25,474 + PGA1_262p00210 0.43 -0.9 25,474 + PGA1_262p00210 0.43 -0.3 25,474 + PGA1_262p00210 0.43 +0.7 25,474 + PGA1_262p00210 0.43 +0.0 25,672 - PGA1_262p00210 0.55 +0.7 25,677 - PGA1_262p00210 0.55 +0.4 25,716 + PGA1_262p00210 0.58 -2.5 25,778 - PGA1_262p00210 0.61 -0.0 25,778 - PGA1_262p00210 0.61 -1.9 25,778 - PGA1_262p00210 0.61 -0.9 25,778 - PGA1_262p00210 0.61 -0.0 25,783 - PGA1_262p00210 0.62 +0.1 25,783 - PGA1_262p00210 0.62 +0.0 25,864 - PGA1_262p00210 0.66 +0.3 25,875 + PGA1_262p00210 0.67 -0.5 26,011 + PGA1_262p00210 0.75 +0.7 26,078 + PGA1_262p00210 0.79 +1.2 26,078 + PGA1_262p00210 0.79 -0.7 26,163 - PGA1_262p00210 0.84 -0.7 26,308 + -0.5 26,372 - -0.2 26,411 + +0.0 26,455 - -1.2 26,544 + PGA1_262p00220 0.11 -0.3 26,594 + PGA1_262p00220 0.15 -0.6 26,629 + PGA1_262p00220 0.18 +0.4 26,655 - PGA1_262p00220 0.20 -1.1 26,826 - PGA1_262p00220 0.35 -0.3 26,928 - PGA1_262p00220 0.43 +0.1 27,002 + PGA1_262p00220 0.50 -0.9 27,002 + PGA1_262p00220 0.50 -0.5 27,010 - PGA1_262p00220 0.50 -0.0 27,010 - PGA1_262p00220 0.50 -0.0 27,010 - PGA1_262p00220 0.50 -0.7 27,010 - PGA1_262p00220 0.50 -0.3 27,123 - PGA1_262p00220 0.60 -1.3 27,144 + PGA1_262p00220 0.62 -0.7 27,159 - PGA1_262p00220 0.63 +1.0 27,193 + PGA1_262p00220 0.66 -0.7 27,251 - PGA1_262p00220 0.71 +2.0 27,333 - PGA1_262p00220 0.78 +0.1 27,390 + PGA1_262p00220 0.83 +0.2 27,390 + PGA1_262p00220 0.83 -2.5 27,390 + PGA1_262p00220 0.83 -0.6 27,390 + PGA1_262p00220 0.83 +0.2 27,398 - PGA1_262p00220 0.83 -1.6 27,400 + PGA1_262p00220 0.84 -1.5 27,419 - PGA1_262p00220 0.85 -0.3 27,419 - PGA1_262p00220 0.85 -1.1 27,447 - PGA1_262p00220 0.88 +1.7 27,447 - PGA1_262p00220 0.88 -0.7 27,523 - -1.4 27,530 - -0.5 27,563 + +0.4 27,576 - +0.3 27,676 + -0.0 27,730 + -0.1 28,180 + PGA1_262p00230 0.40 -0.6 28,312 + PGA1_262p00230 0.49 -1.7 28,334 + PGA1_262p00230 0.50 +0.0 28,336 - PGA1_262p00230 0.50 -0.1 28,352 + PGA1_262p00230 0.51 +0.2 28,366 + PGA1_262p00230 0.52 +0.3 28,373 + PGA1_262p00230 0.53 +0.0 28,438 - PGA1_262p00230 0.57 +0.0
Or see this region's nucleotide sequence