Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20440

Experiment: Carbon source L-Citrulline 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source L-Citrulline 5 mM
2,120,008	+		PGA1_c20420	0.59	-0.7
2,120,058	-		PGA1_c20420	0.68	+0.6
2,120,098	+		PGA1_c20420	0.75	+0.7
2,120,155	+		PGA1_c20420	0.85	+0.0
2,120,166	+		PGA1_c20420	0.86	-0.2
2,120,167	+		PGA1_c20420	0.87	+0.5
2,120,198	-				-0.3
2,120,235	-				+1.2
2,120,235	-				-1.2
2,120,263	-				-0.3
2,120,265	-				+0.1
2,120,282	-				-0.4
2,120,295	+				-0.0
2,120,312	+				+0.5
2,120,312	+				+0.1
2,120,312	+				+1.2
2,120,312	+				-1.2
2,120,312	+				-0.2
2,120,320	-				+0.0
2,120,320	-				-0.0
2,120,320	-				+0.2
2,120,436	+				+1.3
2,120,444	-				+0.4
2,120,448	+				+1.0
2,120,456	-				-0.3
2,120,471	+				+0.4
2,120,516	-				-0.1
2,120,530	+		PGA1_c20430	0.11	+0.5
2,120,627	+		PGA1_c20430	0.34	+0.2
2,120,657	+		PGA1_c20430	0.41	+0.8
2,120,657	+		PGA1_c20430	0.41	+1.5
2,120,657	+		PGA1_c20430	0.41	+0.8
2,120,657	+		PGA1_c20430	0.41	+0.6
2,120,657	+		PGA1_c20430	0.41	+0.7
2,120,657	+		PGA1_c20430	0.41	+0.1
2,120,657	+		PGA1_c20430	0.41	-0.2
2,120,657	+		PGA1_c20430	0.41	-0.2
2,120,657	+		PGA1_c20430	0.41	+0.4
2,120,657	+		PGA1_c20430	0.41	+0.2
2,120,657	+		PGA1_c20430	0.41	-0.9
2,120,659	+		PGA1_c20430	0.42	-0.7
2,120,665	-		PGA1_c20430	0.43	+0.3
2,120,665	-		PGA1_c20430	0.43	-2.2
2,120,665	-		PGA1_c20430	0.43	-0.0
2,120,665	-		PGA1_c20430	0.43	-0.9
2,120,665	-		PGA1_c20430	0.43	-0.1
2,120,665	-		PGA1_c20430	0.43	+1.2
2,120,665	-		PGA1_c20430	0.43	+0.9
2,120,665	-		PGA1_c20430	0.43	-0.1
2,120,665	-		PGA1_c20430	0.43	+1.2
2,120,665	-		PGA1_c20430	0.43	+0.8
2,120,667	+		PGA1_c20430	0.43	-0.1
2,120,685	-		PGA1_c20430	0.48	+0.6
2,120,688	+		PGA1_c20430	0.48	-0.0
2,120,696	-		PGA1_c20430	0.50	-1.0
2,120,707	+		PGA1_c20430	0.53	+0.7
2,120,715	+		PGA1_c20430	0.55	+0.4
2,120,715	+		PGA1_c20430	0.55	+0.2
2,120,715	-		PGA1_c20430	0.55	+0.6
2,120,718	-		PGA1_c20430	0.56	-0.3
2,120,718	-		PGA1_c20430	0.56	-1.1
2,120,757	-		PGA1_c20430	0.65	-2.7
2,120,768	-		PGA1_c20430	0.67	-0.5
2,120,775	+		PGA1_c20430	0.69	-0.4
2,120,783	-		PGA1_c20430	0.71	+0.1
2,120,810	+		PGA1_c20430	0.77	-0.5
2,120,819	+		PGA1_c20430	0.79	+0.2
2,120,819	-		PGA1_c20430	0.79	+0.9
2,120,852	-		PGA1_c20430	0.87	+0.9
2,120,853	+		PGA1_c20430	0.87	+0.2
2,120,853	+		PGA1_c20430	0.87	+0.1
2,120,853	+		PGA1_c20430	0.87	-0.4
2,120,861	-		PGA1_c20430	0.89	+1.5
2,120,861	-		PGA1_c20430	0.89	-1.1
2,120,861	-		PGA1_c20430	0.89	-1.0
2,120,868	+				-0.1
2,120,868	+				-0.2
2,120,875	+				+1.9
2,120,875	+				-0.5
2,120,892	-				+1.0
2,120,928	-				-0.4
2,120,955	-				+0.1
2,120,974	+				+0.0
2,120,974	+				+0.5
2,120,974	+				+1.0
2,120,982	-				-0.8
2,120,982	-				-0.1
2,120,982	-				-0.1
2,120,982	-				-0.5
2,121,096	-		PGA1_c20440	0.43	+0.6
2,121,101	+		PGA1_c20440	0.44	-2.5
2,121,109	-		PGA1_c20440	0.46	-2.9
2,121,109	-		PGA1_c20440	0.46	+0.0
2,121,109	-		PGA1_c20440	0.46	+1.1
2,121,109	-		PGA1_c20440	0.46	-2.0
2,121,125	-		PGA1_c20440	0.51	+1.2
2,121,127	+		PGA1_c20440	0.52	-1.4
2,121,135	-		PGA1_c20440	0.54	-0.8
2,121,135	-		PGA1_c20440	0.54	+0.8
2,121,165	+		PGA1_c20440	0.63	-0.7
2,121,168	-		PGA1_c20440	0.63	-0.7
2,121,173	-		PGA1_c20440	0.65	-0.1
2,121,173	-		PGA1_c20440	0.65	-1.8
2,121,175	+		PGA1_c20440	0.66	+0.6
2,121,216	+		PGA1_c20440	0.77	-0.2
2,121,231	-		PGA1_c20440	0.82	-0.3
2,121,231	-		PGA1_c20440	0.82	-0.6
2,121,290	-				+0.2
2,121,327	-		PGA1_c20450	0.13	-0.6
2,121,329	+		PGA1_c20450	0.14	+0.4
2,121,334	+		PGA1_c20450	0.17	-0.8
2,121,334	+		PGA1_c20450	0.17	-1.2
2,121,334	+		PGA1_c20450	0.17	-0.8
2,121,334	+		PGA1_c20450	0.17	+1.5
2,121,342	-		PGA1_c20450	0.21	-0.6
2,121,342	-		PGA1_c20450	0.21	-0.0
2,121,343	-		PGA1_c20450	0.21	-0.3
2,121,343	-		PGA1_c20450	0.21	+0.3
2,121,345	+		PGA1_c20450	0.22	+0.6
2,121,345	+		PGA1_c20450	0.22	-1.1
2,121,345	+		PGA1_c20450	0.22	+0.9
2,121,345	+		PGA1_c20450	0.22	-0.6
2,121,345	+		PGA1_c20450	0.22	+0.6
2,121,345	+		PGA1_c20450	0.22	+0.9
2,121,353	-		PGA1_c20450	0.27	-0.4
2,121,353	-		PGA1_c20450	0.27	+0.4
2,121,353	-		PGA1_c20450	0.27	+0.7
2,121,353	-		PGA1_c20450	0.27	-0.5
2,121,353	-		PGA1_c20450	0.27	-0.8
2,121,353	-		PGA1_c20450	0.27	+0.1
2,121,353	-		PGA1_c20450	0.27	+0.1
2,121,360	+		PGA1_c20450	0.30	+0.5
2,121,365	+		PGA1_c20450	0.33	-0.2
2,121,373	-		PGA1_c20450	0.37	-0.4
2,121,378	-		PGA1_c20450	0.40	-1.2
2,121,383	-		PGA1_c20450	0.42	-1.1
2,121,400	+		PGA1_c20450	0.51	-1.1
2,121,451	-		PGA1_c20450	0.78	-0.6
2,121,476	+				+0.6
2,121,476	+				+0.0
2,121,476	+				-0.7
2,121,476	+				-0.0
2,121,478	+				+0.6
2,121,486	-				-1.7
2,121,486	-				-1.1
2,121,486	-				-1.5
2,121,511	+				+0.6
2,121,516	+				+0.8
2,121,521	+				-0.8
2,121,521	+				+0.5
2,121,528	+				+0.8
2,121,529	-				+0.5
2,121,538	+				-0.5
2,121,538	+				+1.0
2,121,538	+				+0.4
2,121,538	+				+0.8
2,121,538	+				-0.7
2,121,538	+				+0.5
2,121,538	+				-0.3
2,121,538	+				+1.1
2,121,538	+				-0.7
2,121,538	+				+1.3
2,121,538	+				+0.2
2,121,538	+				+0.1
2,121,538	+				-0.2
2,121,538	+				-0.7
2,121,546	-				-0.2
2,121,546	-				+0.7
2,121,546	-				+1.4
2,121,546	-				+0.9
2,121,546	-				+0.3
2,121,546	-				+0.2
2,121,546	-				-0.1
2,121,546	-				+0.1
2,121,546	-				-0.2
2,121,546	-				+0.1
2,121,546	-				-1.4
2,121,546	-				+0.0
2,121,546	-				+0.3
2,121,546	-				-0.7
2,121,546	-				-0.4
2,121,546	-				-0.3
2,121,547	-				+0.3
2,121,548	+				-0.1
2,121,548	+				+0.5
2,121,636	+				-0.3
2,121,636	+				+0.4
2,121,644	-				-0.8
2,121,644	-				+0.6
2,121,644	-				-0.6
2,121,644	-				+0.2
2,121,644	-				-1.4
2,121,646	-				+0.9
2,121,721	-		PGA1_c20460	0.11	-0.0
2,121,729	+		PGA1_c20460	0.11	-0.7
2,121,735	+		PGA1_c20460	0.12	+0.2
2,121,737	-		PGA1_c20460	0.12	-0.1
2,121,793	-		PGA1_c20460	0.18	-1.4
2,121,795	+		PGA1_c20460	0.18	+0.8
2,121,802	-		PGA1_c20460	0.18	-0.2
2,121,808	+		PGA1_c20460	0.19	+0.3
2,121,876	+		PGA1_c20460	0.26	+0.7
2,121,881	+		PGA1_c20460	0.26	-0.4
2,121,881	+		PGA1_c20460	0.26	-0.2
2,121,886	+		PGA1_c20460	0.27	+0.6
2,121,887	+		PGA1_c20460	0.27	+0.4
2,121,889	-		PGA1_c20460	0.27	-0.3
2,121,901	-		PGA1_c20460	0.28	+0.3
2,121,948	-		PGA1_c20460	0.33	-0.9
2,121,948	-		PGA1_c20460	0.33	-0.8
2,121,952	-		PGA1_c20460	0.33	-0.2
2,121,968	+		PGA1_c20460	0.35	+0.0
2,121,976	-		PGA1_c20460	0.35	-0.3
2,121,976	-		PGA1_c20460	0.35	+0.1
2,121,978	-		PGA1_c20460	0.36	+0.9
2,122,025	+		PGA1_c20460	0.40	+0.3
2,122,067	+		PGA1_c20460	0.44	-0.4
2,122,076	+		PGA1_c20460	0.45	+0.3
2,122,078	+		PGA1_c20460	0.45	+1.5
2,122,083	+		PGA1_c20460	0.46	+0.5
2,122,084	-		PGA1_c20460	0.46	+0.7
2,122,084	-		PGA1_c20460	0.46	-0.4
2,122,088	-		PGA1_c20460	0.46	-2.1
2,122,122	-		PGA1_c20460	0.50	+0.1
2,122,123	+		PGA1_c20460	0.50	+0.9
2,122,147	+		PGA1_c20460	0.52	-1.2
2,122,147	+		PGA1_c20460	0.52	+0.3
2,122,155	-		PGA1_c20460	0.53	+1.0
2,122,160	+		PGA1_c20460	0.53	+0.5
2,122,165	-		PGA1_c20460	0.54	+0.6
2,122,172	+		PGA1_c20460	0.55	-2.2
2,122,197	-		PGA1_c20460	0.57	+0.5
2,122,197	-		PGA1_c20460	0.57	-0.3
2,122,285	-		PGA1_c20460	0.66	-1.2