Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16370 and PGA1_c16380 overlap by 4 nucleotides PGA1_c16380 and PGA1_c16390 overlap by 4 nucleotides PGA1_c16390 and PGA1_c16400 are separated by 81 nucleotides
PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897
_c16370
PGA1_c16380: PGA1_c16380 - citrulline utilization hydrolase (from data) , at 1,698,894 to 1,699,823
_c16380
PGA1_c16390: PGA1_c16390 - ornithine cyclodeaminase ArcB, at 1,699,820 to 1,700,866
_c16390
PGA1_c16400: PGA1_c16400 - HNH endonuclease, at 1,700,948 to 1,701,514
_c16400
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1698.845 kb on + strand at 1698.850 kb on + strand at 1698.981 kb on + strand at 1698.989 kb on - strand, within PGA1_c16380 at 1699.016 kb on - strand, within PGA1_c16380 at 1699.023 kb on - strand, within PGA1_c16380 at 1699.072 kb on - strand, within PGA1_c16380 at 1699.074 kb on - strand, within PGA1_c16380 at 1699.118 kb on - strand, within PGA1_c16380 at 1699.234 kb on + strand, within PGA1_c16380 at 1699.238 kb on + strand, within PGA1_c16380 at 1699.283 kb on + strand, within PGA1_c16380 at 1699.309 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.388 kb on + strand, within PGA1_c16380 at 1699.437 kb on - strand, within PGA1_c16380 at 1699.450 kb on - strand, within PGA1_c16380 at 1699.460 kb on + strand, within PGA1_c16380 at 1699.502 kb on - strand, within PGA1_c16380 at 1699.525 kb on - strand, within PGA1_c16380 at 1699.666 kb on - strand, within PGA1_c16380 at 1699.829 kb on + strand at 1700.076 kb on + strand, within PGA1_c16390 at 1700.084 kb on + strand, within PGA1_c16390 at 1700.084 kb on - strand, within PGA1_c16390 at 1700.110 kb on - strand, within PGA1_c16390 at 1700.436 kb on - strand, within PGA1_c16390 at 1700.486 kb on + strand, within PGA1_c16390 at 1700.498 kb on + strand, within PGA1_c16390 at 1700.747 kb on + strand, within PGA1_c16390 at 1700.836 kb on + strand at 1700.886 kb on + strand at 1700.980 kb on + strand at 1700.999 kb on - strand at 1701.001 kb on + strand at 1701.009 kb on - strand, within PGA1_c16400 at 1701.009 kb on - strand, within PGA1_c16400 at 1701.023 kb on + strand, within PGA1_c16400 at 1701.067 kb on - strand, within PGA1_c16400 at 1701.067 kb on - strand, within PGA1_c16400 at 1701.092 kb on - strand, within PGA1_c16400 at 1701.153 kb on - strand, within PGA1_c16400 at 1701.283 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.383 kb on - strand, within PGA1_c16400 at 1701.393 kb on - strand, within PGA1_c16400 at 1701.445 kb on + strand, within PGA1_c16400 at 1701.508 kb on + strand at 1701.516 kb on - strand at 1701.537 kb on + strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.545 kb on - strand at 1701.592 kb on + strand at 1701.600 kb on - strand at 1701.701 kb on - strand at 1701.727 kb on - strand at 1701.778 kb on - strand at 1701.796 kb on - strand at 1701.801 kb on + strand at 1701.810 kb on - strand at 1701.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 1,698,845 + -2.7 1,698,850 + -2.9 1,698,981 + -3.4 1,698,989 - PGA1_c16380 0.10 -2.8 1,699,016 - PGA1_c16380 0.13 -2.2 1,699,023 - PGA1_c16380 0.14 -1.9 1,699,072 - PGA1_c16380 0.19 -2.8 1,699,074 - PGA1_c16380 0.19 -0.3 1,699,118 - PGA1_c16380 0.24 -4.3 1,699,234 + PGA1_c16380 0.37 -2.2 1,699,238 + PGA1_c16380 0.37 -0.7 1,699,283 + PGA1_c16380 0.42 -3.0 1,699,309 + PGA1_c16380 0.45 -1.7 1,699,388 + PGA1_c16380 0.53 -2.4 1,699,388 + PGA1_c16380 0.53 -2.4 1,699,437 - PGA1_c16380 0.58 -2.2 1,699,450 - PGA1_c16380 0.60 -2.2 1,699,460 + PGA1_c16380 0.61 -2.2 1,699,502 - PGA1_c16380 0.65 -1.0 1,699,525 - PGA1_c16380 0.68 -1.6 1,699,666 - PGA1_c16380 0.83 -1.7 1,699,829 + -3.1 1,700,076 + PGA1_c16390 0.24 -1.2 1,700,084 + PGA1_c16390 0.25 -1.5 1,700,084 - PGA1_c16390 0.25 -2.6 1,700,110 - PGA1_c16390 0.28 -2.1 1,700,436 - PGA1_c16390 0.59 -3.2 1,700,486 + PGA1_c16390 0.64 -2.3 1,700,498 + PGA1_c16390 0.65 -1.1 1,700,747 + PGA1_c16390 0.89 -3.6 1,700,836 + +0.5 1,700,886 + -0.8 1,700,980 + -0.6 1,700,999 - +0.2 1,701,001 + -0.1 1,701,009 - PGA1_c16400 0.11 -2.2 1,701,009 - PGA1_c16400 0.11 +1.1 1,701,023 + PGA1_c16400 0.13 -0.8 1,701,067 - PGA1_c16400 0.21 +0.8 1,701,067 - PGA1_c16400 0.21 +0.1 1,701,092 - PGA1_c16400 0.25 -0.1 1,701,153 - PGA1_c16400 0.36 +1.5 1,701,283 - PGA1_c16400 0.59 +0.4 1,701,383 - PGA1_c16400 0.77 +0.0 1,701,383 - PGA1_c16400 0.77 -0.7 1,701,383 - PGA1_c16400 0.77 -0.5 1,701,383 - PGA1_c16400 0.77 -1.1 1,701,393 - PGA1_c16400 0.78 -0.9 1,701,445 + PGA1_c16400 0.88 -0.3 1,701,508 + -0.4 1,701,516 - -1.5 1,701,537 + +0.4 1,701,545 - +0.2 1,701,545 - -0.1 1,701,545 - +0.3 1,701,545 - +0.3 1,701,592 + -1.1 1,701,600 - -1.1 1,701,701 - -1.5 1,701,727 - -1.3 1,701,778 - -1.3 1,701,796 - -0.8 1,701,801 + -1.1 1,701,810 - +0.0 1,701,865 + +0.2
Or see this region's nucleotide sequence