Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16425

Experiment: malate (C) and Ammonium chloride (N); with MOPS; with PEG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS; with PEG
3,725,401	+		PFLU_RS16420	0.68	+0.6
3,725,401	+		PFLU_RS16420	0.68	+0.1
3,725,402	-		PFLU_RS16420	0.68	-1.5
3,725,402	-		PFLU_RS16420	0.68	-0.7
3,725,407	+		PFLU_RS16420	0.68	-1.6
3,725,407	+		PFLU_RS16420	0.68	-0.5
3,725,407	+		PFLU_RS16420	0.68	-0.6
3,725,407	+		PFLU_RS16420	0.68	-1.3
3,725,408	-		PFLU_RS16420	0.69	+0.4
3,725,408	-		PFLU_RS16420	0.69	-0.4
3,725,408	-		PFLU_RS16420	0.69	-0.3
3,725,408	-		PFLU_RS16420	0.69	+1.3
3,725,408	-		PFLU_RS16420	0.69	+0.1
3,725,408	-		PFLU_RS16420	0.69	-0.1
3,725,408	-		PFLU_RS16420	0.69	-0.6
3,725,823	+		PFLU_RS16420	0.88	-0.9
3,725,823	+		PFLU_RS16420	0.88	+0.4
3,725,823	+		PFLU_RS16420	0.88	+0.1
3,725,823	+		PFLU_RS16420	0.88	+0.9
3,725,823	+		PFLU_RS16420	0.88	-0.3
3,725,823	+		PFLU_RS16420	0.88	-0.5
3,725,823	+		PFLU_RS16420	0.88	+0.6
3,725,823	+		PFLU_RS16420	0.88	+0.2
3,725,823	+		PFLU_RS16420	0.88	-1.5
3,725,824	-		PFLU_RS16420	0.88	+0.7
3,725,824	-		PFLU_RS16420	0.88	+1.0
3,725,824	-		PFLU_RS16420	0.88	+1.0
3,725,824	-		PFLU_RS16420	0.88	-1.4
3,725,845	+		PFLU_RS16420	0.89	+0.3
3,725,845	+		PFLU_RS16420	0.89	-2.1
3,726,046	+				+1.1
3,726,046	+				+0.7
3,726,046	+				-0.3
3,726,047	-				+1.2
3,726,047	-				+0.0
3,726,047	-				+0.0
3,726,144	+				+0.6
3,726,145	-				-0.8
3,726,174	+				-0.5
3,726,175	-				-0.7
3,726,219	+				+1.3
3,726,219	+				-0.6
3,726,220	-				-2.1
3,726,220	-				-0.7
3,726,408	+		PFLU_RS16425	0.13	+0.3
3,726,409	-		PFLU_RS16425	0.13	-0.4
3,726,555	+		PFLU_RS16425	0.18	-0.7
3,726,555	+		PFLU_RS16425	0.18	-2.2
3,726,555	+		PFLU_RS16425	0.18	-0.2
3,726,555	+		PFLU_RS16425	0.18	+0.2
3,726,556	-		PFLU_RS16425	0.18	+0.4
3,726,556	-		PFLU_RS16425	0.18	-1.0
3,726,556	-		PFLU_RS16425	0.18	+0.6
3,726,556	-		PFLU_RS16425	0.18	-1.2
3,726,556	-		PFLU_RS16425	0.18	+0.2
3,726,567	+		PFLU_RS16425	0.18	+0.7
3,726,567	+		PFLU_RS16425	0.18	+1.6
3,726,567	+		PFLU_RS16425	0.18	-0.8
3,726,600	+		PFLU_RS16425	0.20	-0.3
3,726,601	-		PFLU_RS16425	0.20	+0.3
3,726,601	-		PFLU_RS16425	0.20	-0.4
3,726,681	+		PFLU_RS16425	0.23	-0.2
3,726,681	+		PFLU_RS16425	0.23	-0.9
3,726,681	+		PFLU_RS16425	0.23	+0.3
3,726,682	-		PFLU_RS16425	0.23	-0.2
3,726,682	-		PFLU_RS16425	0.23	+0.2
3,726,682	-		PFLU_RS16425	0.23	-0.4
3,726,998	+		PFLU_RS16425	0.34	+0.4
3,726,999	-		PFLU_RS16425	0.34	-0.7
3,726,999	-		PFLU_RS16425	0.34	-0.2
3,726,999	-		PFLU_RS16425	0.34	+1.6
3,726,999	-		PFLU_RS16425	0.34	-0.3
3,727,256	+		PFLU_RS16425	0.43	-0.6
3,727,440	+		PFLU_RS16425	0.50	+0.4
3,727,440	+		PFLU_RS16425	0.50	+0.0
3,727,440	+		PFLU_RS16425	0.50	-0.4
3,727,440	+		PFLU_RS16425	0.50	+0.3
3,727,440	+		PFLU_RS16425	0.50	+2.7
3,727,440	+		PFLU_RS16425	0.50	-1.9
3,727,440	+		PFLU_RS16425	0.50	-0.8
3,727,440	+		PFLU_RS16425	0.50	+0.8
3,727,440	+		PFLU_RS16425	0.50	+0.5
3,727,441	-		PFLU_RS16425	0.50	-0.7
3,727,441	-		PFLU_RS16425	0.50	-0.7
3,727,441	-		PFLU_RS16425	0.50	-1.3
3,727,441	-		PFLU_RS16425	0.50	-1.9
3,727,441	-		PFLU_RS16425	0.50	-0.5
3,727,686	+		PFLU_RS16425	0.59	+0.2
3,727,686	+		PFLU_RS16425	0.59	+0.6
3,727,687	-		PFLU_RS16425	0.59	+2.0
3,727,687	-		PFLU_RS16425	0.59	-0.9
3,727,890	+		PFLU_RS16425	0.67	+0.1
3,727,890	+		PFLU_RS16425	0.67	+1.9
3,727,891	-		PFLU_RS16425	0.67	-0.4
3,727,891	-		PFLU_RS16425	0.67	-2.3
3,727,980	+		PFLU_RS16425	0.70	-2.0
3,727,981	-		PFLU_RS16425	0.70	+0.0
3,728,118	+		PFLU_RS16425	0.75	-0.2
3,728,118	+		PFLU_RS16425	0.75	-0.3
3,728,118	+		PFLU_RS16425	0.75	-0.1
3,728,118	+		PFLU_RS16425	0.75	-1.0
3,728,119	-		PFLU_RS16425	0.75	-0.4
3,728,119	-		PFLU_RS16425	0.75	-0.2
3,728,119	-		PFLU_RS16425	0.75	-0.2
3,728,286	+		PFLU_RS16425	0.81	-1.0
3,728,462	+		PFLU_RS16425	0.87	-1.6
3,728,462	+		PFLU_RS16425	0.87	-0.2
3,728,496	+		PFLU_RS16425	0.89	+0.2
3,728,496	+		PFLU_RS16425	0.89	+0.7
3,728,496	+		PFLU_RS16425	0.89	-0.3
3,728,496	+		PFLU_RS16425	0.89	+0.4
3,728,496	+		PFLU_RS16425	0.89	-2.1
3,728,496	+		PFLU_RS16425	0.89	-0.8
3,728,496	+		PFLU_RS16425	0.89	+0.8
3,728,496	+		PFLU_RS16425	0.89	-0.6
3,728,497	-		PFLU_RS16425	0.89	-1.9
3,728,497	-		PFLU_RS16425	0.89	+0.2
3,728,497	-		PFLU_RS16425	0.89	-1.8
3,728,497	-		PFLU_RS16425	0.89	+0.9
3,728,497	-		PFLU_RS16425	0.89	+0.7
3,728,497	-		PFLU_RS16425	0.89	-0.2
3,728,497	-		PFLU_RS16425	0.89	+0.6
3,728,497	-		PFLU_RS16425	0.89	-0.3
3,728,497	-		PFLU_RS16425	0.89	-0.4
3,728,498	+		PFLU_RS16425	0.89	+0.2
3,728,498	+		PFLU_RS16425	0.89	-0.2
3,728,498	+		PFLU_RS16425	0.89	-0.8
3,728,498	+		PFLU_RS16425	0.89	-1.3
3,728,498	+		PFLU_RS16425	0.89	+1.0
3,728,498	+		PFLU_RS16425	0.89	-0.9
3,728,498	+		PFLU_RS16425	0.89	-0.4
3,728,498	+		PFLU_RS16425	0.89	+0.4
3,728,498	+		PFLU_RS16425	0.89	-0.0
3,728,498	+		PFLU_RS16425	0.89	+0.1
3,728,498	+		PFLU_RS16425	0.89	-0.7
3,728,498	+		PFLU_RS16425	0.89	-1.4
3,728,499	-		PFLU_RS16425	0.89	+0.3
3,728,499	-		PFLU_RS16425	0.89	-1.6
3,728,499	-		PFLU_RS16425	0.89	+0.5
3,728,499	-		PFLU_RS16425	0.89	-0.6
3,728,499	-		PFLU_RS16425	0.89	-0.5
3,728,499	-		PFLU_RS16425	0.89	+0.0
3,728,499	-		PFLU_RS16425	0.89	-0.2
3,728,499	-		PFLU_RS16425	0.89	+0.6
3,728,499	-		PFLU_RS16425	0.89	-0.9
3,728,499	-		PFLU_RS16425	0.89	+0.2
3,728,499	-		PFLU_RS16425	0.89	-0.4
3,728,568	+				+0.2
3,728,568	+				+0.2
3,728,568	+				+0.0
3,728,569	-				+0.1
3,728,569	-				-0.0
3,728,711	+				+2.0
3,728,711	+				+0.3
3,728,839	+				+0.6
3,728,839	+				-2.5
3,728,839	+				-1.2
3,728,856	+				-0.6
3,729,097	+				-1.2
3,729,097	+				+0.4
3,729,097	+				+0.2
3,729,098	-				-0.0
3,729,156	+				-1.9
3,729,157	-				+0.6
3,729,428	-				+1.6
3,729,428	-				-1.7
3,729,428	-				-0.1
3,729,452	-		PFLU_RS16435	0.10	-0.7
3,729,481	+		PFLU_RS16435	0.12	-1.6
3,729,481	+		PFLU_RS16435	0.12	-1.6
3,729,481	+		PFLU_RS16435	0.12	-2.2
3,729,481	+		PFLU_RS16435	0.12	+0.1
3,729,497	-		PFLU_RS16435	0.13	-2.3
3,729,497	-		PFLU_RS16435	0.13	-0.7
3,729,497	-		PFLU_RS16435	0.13	-1.4
3,729,497	-		PFLU_RS16435	0.13	-1.3
3,729,505	+		PFLU_RS16435	0.13	+1.2
3,729,505	+		PFLU_RS16435	0.13	-0.9
3,729,506	-		PFLU_RS16435	0.13	-0.7
3,729,559	+		PFLU_RS16435	0.15	+0.1
3,729,559	+		PFLU_RS16435	0.15	-1.0
3,729,560	-		PFLU_RS16435	0.15	+1.0
3,729,611	-		PFLU_RS16435	0.18	-2.2
3,729,676	-		PFLU_RS16435	0.21	-0.7
3,729,744	+		PFLU_RS16435	0.24	-0.6
3,729,744	+		PFLU_RS16435	0.24	+0.2
3,729,744	+		PFLU_RS16435	0.24	-0.9
3,729,744	+		PFLU_RS16435	0.24	+0.6
3,729,754	+		PFLU_RS16435	0.24	-0.1
3,729,754	+		PFLU_RS16435	0.24	-0.3
3,729,754	+		PFLU_RS16435	0.24	+0.3
3,729,755	-		PFLU_RS16435	0.24	+0.0
3,729,780	+		PFLU_RS16435	0.26	-0.5
3,729,780	+		PFLU_RS16435	0.26	-0.5
3,729,780	+		PFLU_RS16435	0.26	-1.2
3,729,780	+		PFLU_RS16435	0.26	-1.3
3,729,781	-		PFLU_RS16435	0.26	+0.4
3,729,781	-		PFLU_RS16435	0.26	-0.4
3,729,781	-		PFLU_RS16435	0.26	+0.0