Experiment: Carbon source L-Citrulline 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21510 and PGA1_c21520 overlap by 38 nucleotides PGA1_c21520 and PGA1_c21525 are separated by 202 nucleotides PGA1_c21525 and PGA1_c21530 are separated by 88 nucleotides
PGA1_c21510: PGA1_c21510 - methylmalonyl-CoA mutase BhbA, at 2,228,021 to 2,230,144
_c21510
PGA1_c21520: PGA1_c21520 - hypothetical protein, at 2,230,107 to 2,231,042
_c21520
PGA1_c21525: PGA1_c21525 - hypothetical protein, at 2,231,245 to 2,231,850
_c21525
PGA1_c21530: PGA1_c21530 - hypothetical protein, at 2,231,939 to 2,232,466
_c21530
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-2
-1
0
1 at 2230.171 kb on - strand at 2230.278 kb on - strand, within PGA1_c21520 at 2230.280 kb on + strand, within PGA1_c21520 at 2230.320 kb on - strand, within PGA1_c21520 at 2230.405 kb on + strand, within PGA1_c21520 at 2230.526 kb on - strand, within PGA1_c21520 at 2230.775 kb on - strand, within PGA1_c21520 at 2231.051 kb on - strand at 2231.051 kb on - strand at 2231.056 kb on - strand at 2231.056 kb on - strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.098 kb on + strand at 2231.106 kb on - strand at 2231.188 kb on + strand at 2231.196 kb on - strand at 2231.766 kb on + strand, within PGA1_c21525
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 10 mM remove 2,230,171 - -0.0 2,230,278 - PGA1_c21520 0.18 -1.3 2,230,280 + PGA1_c21520 0.18 -0.3 2,230,320 - PGA1_c21520 0.23 -0.1 2,230,405 + PGA1_c21520 0.32 -0.2 2,230,526 - PGA1_c21520 0.45 -1.0 2,230,775 - PGA1_c21520 0.71 -0.8 2,231,051 - -2.0 2,231,051 - +0.0 2,231,056 - -0.5 2,231,056 - +0.3 2,231,098 + +1.1 2,231,098 + -0.5 2,231,098 + -0.4 2,231,098 + +0.3 2,231,106 - +1.5 2,231,188 + +1.5 2,231,196 - -1.5 2,231,766 + PGA1_c21525 0.86 -0.6
Or see this region's nucleotide sequence