Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21690 and ABZR87_RS21695 are separated by 154 nucleotides ABZR87_RS21695 and ABZR87_RS21700 are separated by 37 nucleotides ABZR87_RS21700 and ABZR87_RS21705 are separated by 35 nucleotides
ABZR87_RS21690: ABZR87_RS21690 - HIT family protein, at 1,251,421 to 1,251,855
_RS21690
ABZR87_RS21695: ABZR87_RS21695 - PadR family transcriptional regulator, at 1,252,010 to 1,252,639
_RS21695
ABZR87_RS21700: ABZR87_RS21700 - hypothetical protein, at 1,252,677 to 1,252,856
_RS21700
ABZR87_RS21705: ABZR87_RS21705 - CusA/CzcA family heavy metal efflux RND transporter, at 1,252,892 to 1,256,062
_RS21705
Position (kb)
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1 at 1251.854 kb on - strand at 1251.854 kb on - strand at 1252.080 kb on - strand, within ABZR87_RS21695 at 1252.136 kb on + strand, within ABZR87_RS21695 at 1252.148 kb on + strand, within ABZR87_RS21695 at 1252.148 kb on + strand, within ABZR87_RS21695 at 1252.149 kb on - strand, within ABZR87_RS21695 at 1252.235 kb on + strand, within ABZR87_RS21695 at 1252.310 kb on + strand, within ABZR87_RS21695 at 1252.311 kb on - strand, within ABZR87_RS21695 at 1252.311 kb on - strand, within ABZR87_RS21695 at 1252.311 kb on - strand, within ABZR87_RS21695 at 1252.311 kb on - strand, within ABZR87_RS21695 at 1252.311 kb on - strand, within ABZR87_RS21695 at 1252.333 kb on - strand, within ABZR87_RS21695 at 1252.764 kb on + strand, within ABZR87_RS21700 at 1252.765 kb on - strand, within ABZR87_RS21700 at 1252.954 kb on - strand at 1252.966 kb on - strand at 1253.150 kb on + strand at 1253.150 kb on + strand at 1253.278 kb on + strand, within ABZR87_RS21705 at 1253.832 kb on + strand, within ABZR87_RS21705 at 1253.833 kb on - strand, within ABZR87_RS21705 at 1253.833 kb on - strand, within ABZR87_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 1,251,854 - +0.8 1,251,854 - -0.2 1,252,080 - ABZR87_RS21695 0.11 -0.3 1,252,136 + ABZR87_RS21695 0.20 +0.5 1,252,148 + ABZR87_RS21695 0.22 +0.3 1,252,148 + ABZR87_RS21695 0.22 +1.6 1,252,149 - ABZR87_RS21695 0.22 +0.9 1,252,235 + ABZR87_RS21695 0.36 -0.6 1,252,310 + ABZR87_RS21695 0.48 -1.9 1,252,311 - ABZR87_RS21695 0.48 +1.1 1,252,311 - ABZR87_RS21695 0.48 -0.4 1,252,311 - ABZR87_RS21695 0.48 -0.6 1,252,311 - ABZR87_RS21695 0.48 -0.2 1,252,311 - ABZR87_RS21695 0.48 +0.1 1,252,333 - ABZR87_RS21695 0.51 -0.2 1,252,764 + ABZR87_RS21700 0.48 -1.3 1,252,765 - ABZR87_RS21700 0.49 -0.2 1,252,954 - +0.1 1,252,966 - +0.6 1,253,150 + -0.2 1,253,150 + +0.5 1,253,278 + ABZR87_RS21705 0.12 +0.2 1,253,832 + ABZR87_RS21705 0.30 -1.5 1,253,833 - ABZR87_RS21705 0.30 +0.5 1,253,833 - ABZR87_RS21705 0.30 +0.4
Or see this region's nucleotide sequence