Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21445

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21440 and ABZR87_RS21445 are separated by 57 nucleotidesABZR87_RS21445 and ABZR87_RS21450 are separated by 63 nucleotidesABZR87_RS21450 and ABZR87_RS21455 are separated by 108 nucleotides ABZR87_RS21440: ABZR87_RS21440 - SAM-dependent methyltransferase, at 1,191,363 to 1,192,199 _RS21440 ABZR87_RS21445: ABZR87_RS21445 - LysR family transcriptional regulator, at 1,192,257 to 1,193,150 _RS21445 ABZR87_RS21450: ABZR87_RS21450 - isochorismatase family protein, at 1,193,214 to 1,193,816 _RS21450 ABZR87_RS21455: ABZR87_RS21455 - sensor domain-containing diguanylate cyclase, at 1,193,925 to 1,195,397 _RS21455 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1at 1191.483 kb on + strand, within ABZR87_RS21440at 1191.483 kb on + strand, within ABZR87_RS21440at 1191.483 kb on + strand, within ABZR87_RS21440at 1191.484 kb on - strand, within ABZR87_RS21440at 1191.484 kb on - strand, within ABZR87_RS21440at 1191.484 kb on - strand, within ABZR87_RS21440at 1191.576 kb on + strand, within ABZR87_RS21440at 1191.576 kb on + strand, within ABZR87_RS21440at 1191.577 kb on - strand, within ABZR87_RS21440at 1191.577 kb on - strand, within ABZR87_RS21440at 1191.594 kb on + strand, within ABZR87_RS21440at 1191.595 kb on - strand, within ABZR87_RS21440at 1191.596 kb on - strand, within ABZR87_RS21440at 1191.642 kb on + strand, within ABZR87_RS21440at 1191.642 kb on + strand, within ABZR87_RS21440at 1191.642 kb on + strand, within ABZR87_RS21440at 1191.643 kb on - strand, within ABZR87_RS21440at 1191.749 kb on + strand, within ABZR87_RS21440at 1191.750 kb on - strand, within ABZR87_RS21440at 1191.806 kb on + strand, within ABZR87_RS21440at 1191.855 kb on + strand, within ABZR87_RS21440at 1191.856 kb on - strand, within ABZR87_RS21440at 1191.917 kb on + strand, within ABZR87_RS21440at 1191.917 kb on + strand, within ABZR87_RS21440at 1191.917 kb on + strand, within ABZR87_RS21440at 1191.918 kb on - strand, within ABZR87_RS21440at 1191.918 kb on - strand, within ABZR87_RS21440at 1191.918 kb on - strand, within ABZR87_RS21440at 1191.918 kb on - strand, within ABZR87_RS21440at 1191.918 kb on - strand, within ABZR87_RS21440at 1192.029 kb on + strand, within ABZR87_RS21440at 1192.073 kb on + strand, within ABZR87_RS21440at 1192.099 kb on - strand, within ABZR87_RS21440at 1192.099 kb on - strand, within ABZR87_RS21440at 1192.334 kb on - strandat 1192.343 kb on - strandat 1192.345 kb on + strandat 1192.345 kb on + strandat 1192.346 kb on - strandat 1192.418 kb on + strand, within ABZR87_RS21445at 1192.538 kb on + strand, within ABZR87_RS21445at 1192.538 kb on + strand, within ABZR87_RS21445at 1192.637 kb on - strand, within ABZR87_RS21445at 1192.650 kb on + strand, within ABZR87_RS21445at 1192.650 kb on + strand, within ABZR87_RS21445at 1192.651 kb on - strand, within ABZR87_RS21445at 1192.875 kb on - strand, within ABZR87_RS21445at 1192.938 kb on - strand, within ABZR87_RS21445at 1192.955 kb on - strand, within ABZR87_RS21445at 1192.955 kb on - strand, within ABZR87_RS21445at 1193.188 kb on - strandat 1193.188 kb on - strandat 1193.188 kb on - strandat 1193.456 kb on + strand, within ABZR87_RS21450at 1193.457 kb on - strand, within ABZR87_RS21450at 1193.457 kb on - strand, within ABZR87_RS21450at 1193.523 kb on + strand, within ABZR87_RS21450at 1193.524 kb on - strand, within ABZR87_RS21450at 1193.524 kb on - strand, within ABZR87_RS21450at 1193.524 kb on - strand, within ABZR87_RS21450at 1193.550 kb on + strand, within ABZR87_RS21450at 1193.550 kb on + strand, within ABZR87_RS21450at 1193.551 kb on - strand, within ABZR87_RS21450at 1193.551 kb on - strand, within ABZR87_RS21450at 1193.551 kb on - strand, within ABZR87_RS21450at 1193.551 kb on - strand, within ABZR87_RS21450at 1193.551 kb on - strand, within ABZR87_RS21450at 1193.661 kb on - strand, within ABZR87_RS21450at 1193.716 kb on + strand, within ABZR87_RS21450at 1193.717 kb on - strand, within ABZR87_RS21450at 1193.717 kb on - strand, within ABZR87_RS21450at 1193.763 kb on + strandat 1193.968 kb on + strandat 1193.969 kb on - strandat 1193.969 kb on - strandat 1194.064 kb on + strandat 1194.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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1,191,483 + ABZR87_RS21440 0.14 -0.8
1,191,483 + ABZR87_RS21440 0.14 +0.1
1,191,483 + ABZR87_RS21440 0.14 +0.6
1,191,484 - ABZR87_RS21440 0.14 +0.0
1,191,484 - ABZR87_RS21440 0.14 -0.1
1,191,484 - ABZR87_RS21440 0.14 +0.8
1,191,576 + ABZR87_RS21440 0.25 -1.5
1,191,576 + ABZR87_RS21440 0.25 +0.9
1,191,577 - ABZR87_RS21440 0.26 +0.3
1,191,577 - ABZR87_RS21440 0.26 +0.4
1,191,594 + ABZR87_RS21440 0.28 -0.0
1,191,595 - ABZR87_RS21440 0.28 -0.1
1,191,596 - ABZR87_RS21440 0.28 +0.7
1,191,642 + ABZR87_RS21440 0.33 +0.7
1,191,642 + ABZR87_RS21440 0.33 -0.1
1,191,642 + ABZR87_RS21440 0.33 +0.1
1,191,643 - ABZR87_RS21440 0.33 -0.1
1,191,749 + ABZR87_RS21440 0.46 +0.6
1,191,750 - ABZR87_RS21440 0.46 +0.2
1,191,806 + ABZR87_RS21440 0.53 -1.1
1,191,855 + ABZR87_RS21440 0.59 +0.2
1,191,856 - ABZR87_RS21440 0.59 +0.4
1,191,917 + ABZR87_RS21440 0.66 +0.2
1,191,917 + ABZR87_RS21440 0.66 -1.6
1,191,917 + ABZR87_RS21440 0.66 +0.2
1,191,918 - ABZR87_RS21440 0.66 -0.2
1,191,918 - ABZR87_RS21440 0.66 +1.3
1,191,918 - ABZR87_RS21440 0.66 -0.6
1,191,918 - ABZR87_RS21440 0.66 -2.3
1,191,918 - ABZR87_RS21440 0.66 -0.3
1,192,029 + ABZR87_RS21440 0.80 +0.7
1,192,073 + ABZR87_RS21440 0.85 -0.2
1,192,099 - ABZR87_RS21440 0.88 +0.3
1,192,099 - ABZR87_RS21440 0.88 +1.1
1,192,334 - +0.9
1,192,343 - +0.3
1,192,345 + +1.1
1,192,345 + -0.3
1,192,346 - +0.0
1,192,418 + ABZR87_RS21445 0.18 -1.5
1,192,538 + ABZR87_RS21445 0.31 -1.0
1,192,538 + ABZR87_RS21445 0.31 +0.0
1,192,637 - ABZR87_RS21445 0.43 +0.3
1,192,650 + ABZR87_RS21445 0.44 -1.1
1,192,650 + ABZR87_RS21445 0.44 +0.0
1,192,651 - ABZR87_RS21445 0.44 -1.3
1,192,875 - ABZR87_RS21445 0.69 -1.5
1,192,938 - ABZR87_RS21445 0.76 -0.8
1,192,955 - ABZR87_RS21445 0.78 -0.1
1,192,955 - ABZR87_RS21445 0.78 -0.9
1,193,188 - +0.2
1,193,188 - -0.5
1,193,188 - +0.0
1,193,456 + ABZR87_RS21450 0.40 +0.7
1,193,457 - ABZR87_RS21450 0.40 -0.5
1,193,457 - ABZR87_RS21450 0.40 -0.1
1,193,523 + ABZR87_RS21450 0.51 +0.3
1,193,524 - ABZR87_RS21450 0.51 -2.6
1,193,524 - ABZR87_RS21450 0.51 +0.2
1,193,524 - ABZR87_RS21450 0.51 +1.3
1,193,550 + ABZR87_RS21450 0.56 +1.5
1,193,550 + ABZR87_RS21450 0.56 +0.5
1,193,551 - ABZR87_RS21450 0.56 -0.2
1,193,551 - ABZR87_RS21450 0.56 -0.5
1,193,551 - ABZR87_RS21450 0.56 +0.7
1,193,551 - ABZR87_RS21450 0.56 +0.2
1,193,551 - ABZR87_RS21450 0.56 +1.1
1,193,661 - ABZR87_RS21450 0.74 -1.1
1,193,716 + ABZR87_RS21450 0.83 +0.5
1,193,717 - ABZR87_RS21450 0.83 -0.5
1,193,717 - ABZR87_RS21450 0.83 -0.2
1,193,763 + -0.3
1,193,968 + -0.5
1,193,969 - +0.6
1,193,969 - +0.5
1,194,064 + +0.4
1,194,065 - +0.5

Or see this region's nucleotide sequence