Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21145 and ABZR87_RS21150 are separated by 14 nucleotides ABZR87_RS21150 and ABZR87_RS21155 are separated by 3 nucleotides
ABZR87_RS21145: ABZR87_RS21145 - ABC transporter ATP-binding protein, at 1,128,276 to 1,129,190
_RS21145
ABZR87_RS21150: ABZR87_RS21150 - branched-chain amino acid ABC transporter permease, at 1,129,205 to 1,130,086
_RS21150
ABZR87_RS21155: ABZR87_RS21155 - branched-chain amino acid ABC transporter permease, at 1,130,090 to 1,131,169
_RS21155
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-2
-1
0
1 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.802 kb on + strand, within ABZR87_RS21145 at 1128.803 kb on - strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1129.143 kb on + strand at 1129.143 kb on + strand at 1129.144 kb on - strand at 1129.144 kb on - strand at 1129.256 kb on + strand at 1129.257 kb on - strand at 1129.289 kb on + strand at 1129.290 kb on - strand at 1129.290 kb on - strand at 1129.512 kb on - strand, within ABZR87_RS21150 at 1129.555 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.967 kb on + strand, within ABZR87_RS21150 at 1129.968 kb on - strand, within ABZR87_RS21150 at 1130.012 kb on + strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.202 kb on - strand, within ABZR87_RS21155 at 1130.202 kb on - strand, within ABZR87_RS21155 at 1130.232 kb on - strand, within ABZR87_RS21155 at 1130.232 kb on - strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.543 kb on + strand, within ABZR87_RS21155 at 1130.544 kb on - strand, within ABZR87_RS21155 at 1130.636 kb on + strand, within ABZR87_RS21155 at 1130.843 kb on + strand, within ABZR87_RS21155 at 1130.843 kb on + strand, within ABZR87_RS21155 at 1130.844 kb on - strand, within ABZR87_RS21155
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 1,128,555 + ABZR87_RS21145 0.30 -0.5 1,128,555 + ABZR87_RS21145 0.30 -1.3 1,128,802 + ABZR87_RS21145 0.57 +0.0 1,128,803 - ABZR87_RS21145 0.58 +0.3 1,128,913 + ABZR87_RS21145 0.70 -0.8 1,128,913 + ABZR87_RS21145 0.70 -0.3 1,128,913 + ABZR87_RS21145 0.70 -0.1 1,128,913 + ABZR87_RS21145 0.70 -0.5 1,129,143 + -0.6 1,129,143 + -0.4 1,129,144 - +0.1 1,129,144 - -0.6 1,129,256 + +0.4 1,129,257 - +0.7 1,129,289 + +0.5 1,129,290 - -1.8 1,129,290 - +0.8 1,129,512 - ABZR87_RS21150 0.35 -0.4 1,129,555 - ABZR87_RS21150 0.40 -1.4 1,129,683 - ABZR87_RS21150 0.54 -0.4 1,129,683 - ABZR87_RS21150 0.54 -0.0 1,129,967 + ABZR87_RS21150 0.86 +0.1 1,129,968 - ABZR87_RS21150 0.87 -0.9 1,130,012 + -1.4 1,130,013 - +0.0 1,130,013 - -0.2 1,130,013 - +0.2 1,130,013 - -0.1 1,130,202 - ABZR87_RS21155 0.10 -0.1 1,130,202 - ABZR87_RS21155 0.10 -1.4 1,130,232 - ABZR87_RS21155 0.13 -0.3 1,130,232 - ABZR87_RS21155 0.13 -0.2 1,130,486 + ABZR87_RS21155 0.37 -0.9 1,130,486 + ABZR87_RS21155 0.37 -0.2 1,130,486 + ABZR87_RS21155 0.37 -0.4 1,130,543 + ABZR87_RS21155 0.42 -1.0 1,130,544 - ABZR87_RS21155 0.42 -0.5 1,130,636 + ABZR87_RS21155 0.51 +0.1 1,130,843 + ABZR87_RS21155 0.70 -0.2 1,130,843 + ABZR87_RS21155 0.70 +0.0 1,130,844 - ABZR87_RS21155 0.70 +0.2
Or see this region's nucleotide sequence