Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21130 and ABZR87_RS21135 are separated by 347 nucleotides ABZR87_RS21135 and ABZR87_RS21140 are separated by 49 nucleotides ABZR87_RS21140 and ABZR87_RS21145 are separated by 101 nucleotides
ABZR87_RS21130: ABZR87_RS21130 - RNA polymerase sigma factor, at 1,124,749 to 1,126,032
_RS21130
ABZR87_RS21135: ABZR87_RS21135 - FMN reductase, at 1,126,380 to 1,126,961
_RS21135
ABZR87_RS21140: ABZR87_RS21140 - dimethylsulfone monooxygenase SfnG, at 1,127,011 to 1,128,174
_RS21140
ABZR87_RS21145: ABZR87_RS21145 - ABC transporter ATP-binding protein, at 1,128,276 to 1,129,190
_RS21145
Position (kb)
1127
1128
1129 Strain fitness (log2 ratio)
-1
0
1 at 1126.200 kb on + strand at 1126.201 kb on - strand at 1126.216 kb on - strand at 1126.216 kb on - strand at 1126.239 kb on + strand at 1126.240 kb on - strand at 1126.241 kb on + strand at 1126.242 kb on - strand at 1126.257 kb on + strand at 1126.257 kb on + strand at 1126.258 kb on - strand at 1126.261 kb on + strand at 1126.262 kb on - strand at 1126.262 kb on - strand at 1126.262 kb on - strand at 1126.444 kb on + strand, within ABZR87_RS21135 at 1126.445 kb on - strand, within ABZR87_RS21135 at 1126.545 kb on + strand, within ABZR87_RS21135 at 1126.641 kb on + strand, within ABZR87_RS21135 at 1126.642 kb on - strand, within ABZR87_RS21135 at 1126.812 kb on + strand, within ABZR87_RS21135 at 1126.813 kb on - strand, within ABZR87_RS21135 at 1126.813 kb on - strand, within ABZR87_RS21135 at 1127.037 kb on + strand at 1127.038 kb on - strand at 1127.122 kb on + strand at 1127.123 kb on - strand at 1127.123 kb on - strand at 1127.168 kb on - strand, within ABZR87_RS21140 at 1127.201 kb on - strand, within ABZR87_RS21140 at 1127.441 kb on - strand, within ABZR87_RS21140 at 1127.533 kb on + strand, within ABZR87_RS21140 at 1128.055 kb on - strand, within ABZR87_RS21140 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.802 kb on + strand, within ABZR87_RS21145 at 1128.803 kb on - strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1129.143 kb on + strand at 1129.143 kb on + strand at 1129.144 kb on - strand at 1129.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 1,126,200 + -0.3 1,126,201 - -0.9 1,126,216 - +0.6 1,126,216 - -0.1 1,126,239 + +0.0 1,126,240 - -1.1 1,126,241 + +0.5 1,126,242 - -0.1 1,126,257 + +0.1 1,126,257 + -0.5 1,126,258 - +0.2 1,126,261 + +0.4 1,126,262 - -1.0 1,126,262 - -0.1 1,126,262 - +0.6 1,126,444 + ABZR87_RS21135 0.11 +0.2 1,126,445 - ABZR87_RS21135 0.11 +1.1 1,126,545 + ABZR87_RS21135 0.28 +0.4 1,126,641 + ABZR87_RS21135 0.45 +0.9 1,126,642 - ABZR87_RS21135 0.45 +0.1 1,126,812 + ABZR87_RS21135 0.74 -1.7 1,126,813 - ABZR87_RS21135 0.74 +0.7 1,126,813 - ABZR87_RS21135 0.74 +0.4 1,127,037 + -0.2 1,127,038 - +1.2 1,127,122 + -0.7 1,127,123 - -1.1 1,127,123 - +0.5 1,127,168 - ABZR87_RS21140 0.13 -0.2 1,127,201 - ABZR87_RS21140 0.16 +0.2 1,127,441 - ABZR87_RS21140 0.37 -0.2 1,127,533 + ABZR87_RS21140 0.45 -0.0 1,128,055 - ABZR87_RS21140 0.90 +0.7 1,128,555 + ABZR87_RS21145 0.30 -0.5 1,128,555 + ABZR87_RS21145 0.30 -1.3 1,128,802 + ABZR87_RS21145 0.57 +0.0 1,128,803 - ABZR87_RS21145 0.58 +0.3 1,128,913 + ABZR87_RS21145 0.70 -0.8 1,128,913 + ABZR87_RS21145 0.70 -0.3 1,128,913 + ABZR87_RS21145 0.70 -0.1 1,128,913 + ABZR87_RS21145 0.70 -0.5 1,129,143 + -0.6 1,129,143 + -0.4 1,129,144 - +0.1 1,129,144 - -0.6
Or see this region's nucleotide sequence