Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20215 and ABZR87_RS20220 overlap by 37 nucleotides ABZR87_RS20220 and ABZR87_RS20225 are separated by 78 nucleotides ABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotides
ABZR87_RS20215: ABZR87_RS20215 - type VI secretion system baseplate subunit TssG, at 922,696 to 923,787
_RS20215
ABZR87_RS20220: ABZR87_RS20220 - type VI secretion system baseplate subunit TssF, at 923,751 to 925,601
_RS20220
ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153
_RS20225
ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725
_RS20230
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 923.048 kb on + strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.114 kb on + strand, within ABZR87_RS20215 at 923.138 kb on + strand, within ABZR87_RS20215 at 923.177 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.304 kb on - strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.340 kb on - strand, within ABZR87_RS20215 at 923.430 kb on - strand, within ABZR87_RS20215 at 923.435 kb on + strand, within ABZR87_RS20215 at 923.752 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 924.001 kb on + strand, within ABZR87_RS20220 at 924.054 kb on + strand, within ABZR87_RS20220 at 924.237 kb on - strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.536 kb on - strand, within ABZR87_RS20220 at 924.580 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220 at 924.968 kb on - strand, within ABZR87_RS20220 at 924.968 kb on - strand, within ABZR87_RS20220 at 925.036 kb on + strand, within ABZR87_RS20220 at 925.036 kb on + strand, within ABZR87_RS20220 at 925.037 kb on - strand, within ABZR87_RS20220 at 925.037 kb on - strand, within ABZR87_RS20220 at 925.090 kb on + strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.210 kb on + strand, within ABZR87_RS20220 at 925.357 kb on + strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.403 kb on - strand, within ABZR87_RS20220 at 925.579 kb on + strand at 925.579 kb on + strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.894 kb on + strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.948 kb on + strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.310 kb on + strand, within ABZR87_RS20230 at 926.310 kb on + strand, within ABZR87_RS20230 at 926.311 kb on - strand, within ABZR87_RS20230 at 926.332 kb on - strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.509 kb on - strand, within ABZR87_RS20230
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 923,048 + ABZR87_RS20215 0.32 -0.7 923,049 - ABZR87_RS20215 0.32 -2.1 923,049 - ABZR87_RS20215 0.32 -0.6 923,114 + ABZR87_RS20215 0.38 +0.7 923,138 + ABZR87_RS20215 0.40 -1.9 923,177 + ABZR87_RS20215 0.44 -0.2 923,279 + ABZR87_RS20215 0.53 -0.2 923,279 + ABZR87_RS20215 0.53 +0.0 923,280 - ABZR87_RS20215 0.53 +0.0 923,280 - ABZR87_RS20215 0.53 -0.5 923,304 - ABZR87_RS20215 0.56 +0.5 923,321 + ABZR87_RS20215 0.57 +0.6 923,321 + ABZR87_RS20215 0.57 +0.6 923,339 + ABZR87_RS20215 0.59 -0.2 923,339 + ABZR87_RS20215 0.59 -0.1 923,339 + ABZR87_RS20215 0.59 +0.0 923,340 - ABZR87_RS20215 0.59 -0.2 923,430 - ABZR87_RS20215 0.67 -1.2 923,435 + ABZR87_RS20215 0.68 +0.2 923,752 + +0.2 923,854 + +0.5 923,854 + -0.1 923,854 + -0.7 923,854 + +0.3 923,854 + -0.7 923,855 - +0.5 923,855 - +0.5 923,855 - +0.4 923,855 - +0.2 923,855 - -0.3 924,001 + ABZR87_RS20220 0.14 -0.2 924,054 + ABZR87_RS20220 0.16 -2.0 924,237 - ABZR87_RS20220 0.26 +0.5 924,421 + ABZR87_RS20220 0.36 -0.3 924,421 + ABZR87_RS20220 0.36 -0.9 924,464 - ABZR87_RS20220 0.39 -1.3 924,464 - ABZR87_RS20220 0.39 +0.2 924,535 + ABZR87_RS20220 0.42 +0.5 924,535 + ABZR87_RS20220 0.42 -0.2 924,535 + ABZR87_RS20220 0.42 -1.4 924,536 - ABZR87_RS20220 0.42 -0.0 924,580 + ABZR87_RS20220 0.45 -0.1 924,593 + ABZR87_RS20220 0.45 +0.2 924,593 + ABZR87_RS20220 0.45 +1.4 924,593 + ABZR87_RS20220 0.45 -0.3 924,593 + ABZR87_RS20220 0.45 +0.0 924,594 - ABZR87_RS20220 0.46 -1.5 924,594 - ABZR87_RS20220 0.46 -0.3 924,968 - ABZR87_RS20220 0.66 +0.0 924,968 - ABZR87_RS20220 0.66 +0.3 925,036 + ABZR87_RS20220 0.69 +0.5 925,036 + ABZR87_RS20220 0.69 -1.8 925,037 - ABZR87_RS20220 0.69 -0.9 925,037 - ABZR87_RS20220 0.69 -0.7 925,090 + ABZR87_RS20220 0.72 +0.1 925,091 - ABZR87_RS20220 0.72 -0.5 925,091 - ABZR87_RS20220 0.72 -0.6 925,091 - ABZR87_RS20220 0.72 -0.4 925,091 - ABZR87_RS20220 0.72 -0.2 925,210 + ABZR87_RS20220 0.79 +1.1 925,357 + ABZR87_RS20220 0.87 -0.1 925,358 - ABZR87_RS20220 0.87 +0.1 925,358 - ABZR87_RS20220 0.87 -0.0 925,403 - ABZR87_RS20220 0.89 +0.1 925,579 + -0.1 925,579 + +0.5 925,580 - -0.4 925,580 - -0.7 925,580 - +1.8 925,580 - -1.4 925,580 - -1.0 925,894 + ABZR87_RS20225 0.45 -1.1 925,895 - ABZR87_RS20225 0.45 +0.0 925,895 - ABZR87_RS20225 0.45 +1.1 925,895 - ABZR87_RS20225 0.45 -0.0 925,895 - ABZR87_RS20225 0.45 -0.2 925,948 + ABZR87_RS20225 0.57 +0.4 925,949 - ABZR87_RS20225 0.57 +0.3 925,949 - ABZR87_RS20225 0.57 +0.1 926,153 + +0.3 926,153 + -0.1 926,153 + -0.8 926,153 + -1.1 926,154 - +0.1 926,154 - +0.3 926,154 - -0.1 926,154 - -0.5 926,154 - +1.5 926,154 - +0.6 926,161 + +0.0 926,161 + +0.2 926,310 + ABZR87_RS20230 0.17 -0.1 926,310 + ABZR87_RS20230 0.17 -1.3 926,311 - ABZR87_RS20230 0.18 +0.1 926,332 - ABZR87_RS20230 0.22 -1.1 926,424 + ABZR87_RS20230 0.40 -0.1 926,424 + ABZR87_RS20230 0.40 -0.1 926,508 + ABZR87_RS20230 0.57 +0.1 926,508 + ABZR87_RS20230 0.57 +1.2 926,508 + ABZR87_RS20230 0.57 +1.1 926,509 - ABZR87_RS20230 0.57 -0.4
Or see this region's nucleotide sequence