Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18760 and ABZR87_RS18765 are separated by 134 nucleotides ABZR87_RS18765 and ABZR87_RS18770 are separated by 94 nucleotides
ABZR87_RS18760: ABZR87_RS18760 - hypothetical protein, at 561,724 to 562,782
_RS18760
ABZR87_RS18765: ABZR87_RS18765 - S53 family peptidase, at 562,917 to 564,281
_RS18765
ABZR87_RS18770: ABZR87_RS18770 - S10 family peptidase, at 564,376 to 566,109
_RS18770
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.919 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 561.922 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.036 kb on + strand, within ABZR87_RS18760 at 562.037 kb on - strand, within ABZR87_RS18760 at 562.105 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.137 kb on + strand, within ABZR87_RS18760 at 562.138 kb on - strand, within ABZR87_RS18760 at 562.185 kb on + strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.186 kb on - strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.213 kb on + strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.214 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.355 kb on - strand, within ABZR87_RS18760 at 562.438 kb on + strand, within ABZR87_RS18760 at 562.439 kb on - strand, within ABZR87_RS18760 at 562.535 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.547 kb on - strand, within ABZR87_RS18760 at 562.609 kb on + strand, within ABZR87_RS18760 at 562.610 kb on - strand, within ABZR87_RS18760 at 562.636 kb on + strand, within ABZR87_RS18760 at 562.637 kb on - strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.639 kb on + strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.640 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.653 kb on - strand, within ABZR87_RS18760 at 562.678 kb on + strand at 562.678 kb on + strand at 562.678 kb on + strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.679 kb on - strand at 562.792 kb on + strand at 562.792 kb on + strand at 562.793 kb on - strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.897 kb on + strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.898 kb on - strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.901 kb on + strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 562.902 kb on - strand at 563.270 kb on + strand, within ABZR87_RS18765 at 563.308 kb on - strand, within ABZR87_RS18765 at 563.484 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.511 kb on + strand, within ABZR87_RS18765 at 563.512 kb on - strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.598 kb on + strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.599 kb on - strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.757 kb on + strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.758 kb on - strand, within ABZR87_RS18765 at 563.772 kb on - strand, within ABZR87_RS18765 at 564.145 kb on + strand at 564.226 kb on + strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.387 kb on + strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.388 kb on - strand at 564.513 kb on + strand at 564.514 kb on - strand at 564.514 kb on - strand at 564.661 kb on + strand, within ABZR87_RS18770 at 564.662 kb on - strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.793 kb on + strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.794 kb on - strand, within ABZR87_RS18770 at 564.795 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 564.970 kb on + strand, within ABZR87_RS18770 at 565.111 kb on + strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.112 kb on - strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.141 kb on + strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.142 kb on - strand, within ABZR87_RS18770 at 565.204 kb on + strand, within ABZR87_RS18770
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 561,919 + ABZR87_RS18760 0.18 -0.1 561,919 + ABZR87_RS18760 0.18 -1.9 561,919 + ABZR87_RS18760 0.18 +0.1 561,922 + ABZR87_RS18760 0.19 +0.3 561,922 + ABZR87_RS18760 0.19 +1.5 562,036 + ABZR87_RS18760 0.29 +0.1 562,036 + ABZR87_RS18760 0.29 +0.2 562,036 + ABZR87_RS18760 0.29 -0.5 562,037 - ABZR87_RS18760 0.30 +0.3 562,105 + ABZR87_RS18760 0.36 +0.2 562,137 + ABZR87_RS18760 0.39 -1.5 562,137 + ABZR87_RS18760 0.39 +2.2 562,138 - ABZR87_RS18760 0.39 -0.5 562,185 + ABZR87_RS18760 0.44 +0.2 562,186 - ABZR87_RS18760 0.44 -1.0 562,186 - ABZR87_RS18760 0.44 -0.1 562,186 - ABZR87_RS18760 0.44 -0.3 562,213 + ABZR87_RS18760 0.46 -0.2 562,213 + ABZR87_RS18760 0.46 +1.1 562,214 - ABZR87_RS18760 0.46 -0.6 562,214 - ABZR87_RS18760 0.46 -0.2 562,214 - ABZR87_RS18760 0.46 -0.5 562,355 - ABZR87_RS18760 0.60 -0.3 562,355 - ABZR87_RS18760 0.60 -0.2 562,438 + ABZR87_RS18760 0.67 -0.5 562,439 - ABZR87_RS18760 0.68 -0.1 562,535 - ABZR87_RS18760 0.77 +0.5 562,547 - ABZR87_RS18760 0.78 -1.1 562,547 - ABZR87_RS18760 0.78 -0.1 562,609 + ABZR87_RS18760 0.84 -0.0 562,610 - ABZR87_RS18760 0.84 -1.3 562,636 + ABZR87_RS18760 0.86 -0.1 562,637 - ABZR87_RS18760 0.86 -0.7 562,639 + ABZR87_RS18760 0.86 -1.2 562,639 + ABZR87_RS18760 0.86 +0.6 562,639 + ABZR87_RS18760 0.86 +0.1 562,640 - ABZR87_RS18760 0.86 -0.1 562,640 - ABZR87_RS18760 0.86 +0.5 562,640 - ABZR87_RS18760 0.86 -0.5 562,640 - ABZR87_RS18760 0.86 +0.8 562,640 - ABZR87_RS18760 0.86 +0.3 562,640 - ABZR87_RS18760 0.86 +0.1 562,653 - ABZR87_RS18760 0.88 -0.3 562,653 - ABZR87_RS18760 0.88 -0.5 562,653 - ABZR87_RS18760 0.88 +0.4 562,678 + -0.5 562,678 + +0.5 562,678 + +0.1 562,679 - -0.8 562,679 - +0.9 562,679 - +0.5 562,679 - -0.1 562,679 - +0.1 562,679 - +0.6 562,679 - +0.5 562,792 + +0.1 562,792 + +0.1 562,793 - +0.2 562,897 + -1.3 562,897 + -0.2 562,897 + +0.2 562,897 + -0.3 562,897 + -0.7 562,897 + -0.0 562,897 + -0.4 562,898 - +0.6 562,898 - +0.9 562,898 - +0.3 562,898 - -1.0 562,901 + +0.3 562,901 + +0.0 562,901 + -0.2 562,901 + +0.9 562,901 + -0.0 562,901 + -0.2 562,901 + -0.6 562,901 + +0.8 562,901 + +0.2 562,901 + -0.5 562,901 + -0.1 562,901 + -0.2 562,901 + +0.5 562,901 + +0.9 562,902 - -0.5 562,902 - -1.7 562,902 - +0.3 562,902 - -0.1 562,902 - +0.4 562,902 - +0.3 562,902 - -1.1 562,902 - +0.1 562,902 - +0.3 562,902 - +0.2 563,270 + ABZR87_RS18765 0.26 -1.2 563,308 - ABZR87_RS18765 0.29 +0.1 563,484 + ABZR87_RS18765 0.42 -1.3 563,511 + ABZR87_RS18765 0.44 -0.1 563,511 + ABZR87_RS18765 0.44 -0.7 563,512 - ABZR87_RS18765 0.44 +0.6 563,598 + ABZR87_RS18765 0.50 -0.4 563,598 + ABZR87_RS18765 0.50 -1.1 563,598 + ABZR87_RS18765 0.50 -0.3 563,599 - ABZR87_RS18765 0.50 -0.3 563,599 - ABZR87_RS18765 0.50 -1.5 563,757 + ABZR87_RS18765 0.62 -0.2 563,757 + ABZR87_RS18765 0.62 -0.6 563,757 + ABZR87_RS18765 0.62 +0.3 563,758 - ABZR87_RS18765 0.62 -0.1 563,758 - ABZR87_RS18765 0.62 -0.3 563,772 - ABZR87_RS18765 0.63 -2.5 564,145 + -0.8 564,226 + -0.4 564,227 - +0.4 564,227 - -0.2 564,387 + +0.7 564,387 + -0.6 564,387 + -0.5 564,388 - +2.1 564,388 - +0.3 564,388 - +0.0 564,388 - -0.4 564,388 - -0.2 564,388 - +0.5 564,513 + +2.5 564,514 - +0.3 564,514 - +0.9 564,661 + ABZR87_RS18770 0.16 +0.9 564,662 - ABZR87_RS18770 0.16 +0.1 564,793 + ABZR87_RS18770 0.24 -0.1 564,793 + ABZR87_RS18770 0.24 +0.3 564,794 - ABZR87_RS18770 0.24 +0.2 564,794 - ABZR87_RS18770 0.24 -0.1 564,794 - ABZR87_RS18770 0.24 +0.2 564,794 - ABZR87_RS18770 0.24 -0.6 564,795 + ABZR87_RS18770 0.24 -0.9 564,970 + ABZR87_RS18770 0.34 +0.9 564,970 + ABZR87_RS18770 0.34 -0.6 565,111 + ABZR87_RS18770 0.42 +0.3 565,112 - ABZR87_RS18770 0.42 -0.8 565,112 - ABZR87_RS18770 0.42 -0.3 565,112 - ABZR87_RS18770 0.42 -0.6 565,141 + ABZR87_RS18770 0.44 +0.4 565,141 + ABZR87_RS18770 0.44 -0.1 565,141 + ABZR87_RS18770 0.44 +0.3 565,141 + ABZR87_RS18770 0.44 +1.9 565,141 + ABZR87_RS18770 0.44 -0.6 565,142 - ABZR87_RS18770 0.44 +0.0 565,142 - ABZR87_RS18770 0.44 +0.5 565,142 - ABZR87_RS18770 0.44 -0.1 565,142 - ABZR87_RS18770 0.44 +0.6 565,142 - ABZR87_RS18770 0.44 +0.4 565,204 + ABZR87_RS18770 0.48 -0.0
Or see this region's nucleotide sequence