Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18180 and ABZR87_RS18185 overlap by 7 nucleotides ABZR87_RS18185 and ABZR87_RS18190 overlap by 4 nucleotides ABZR87_RS18190 and ABZR87_RS18195 are separated by 374 nucleotides
ABZR87_RS18180: ABZR87_RS18180 - hypothetical protein, at 441,108 to 441,668
_RS18180
ABZR87_RS18185: ABZR87_RS18185 - hypothetical protein, at 441,662 to 442,174
_RS18185
ABZR87_RS18190: ABZR87_RS18190 - Ivy family c-type lysozyme inhibitor, at 442,171 to 442,662
_RS18190
ABZR87_RS18195: ABZR87_RS18195 - hypothetical protein, at 443,037 to 452,582
_RS18195
Position (kb) 442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 441.218 kb on + strand, within ABZR87_RS18180 at 441.219 kb on - strand, within ABZR87_RS18180 at 441.382 kb on - strand, within ABZR87_RS18180 at 441.607 kb on - strand, within ABZR87_RS18180 at 441.666 kb on + strand at 441.667 kb on - strand at 441.667 kb on - strand at 441.774 kb on + strand, within ABZR87_RS18185 at 441.774 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.868 kb on - strand, within ABZR87_RS18185 at 441.915 kb on + strand, within ABZR87_RS18185 at 441.915 kb on + strand, within ABZR87_RS18185 at 441.970 kb on - strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.992 kb on - strand, within ABZR87_RS18185 at 441.992 kb on - strand, within ABZR87_RS18185 at 442.057 kb on - strand, within ABZR87_RS18185 at 442.074 kb on + strand, within ABZR87_RS18185 at 442.454 kb on + strand, within ABZR87_RS18190 at 442.574 kb on + strand, within ABZR87_RS18190 at 442.644 kb on - strand at 442.644 kb on - strand at 442.663 kb on - strand at 442.717 kb on - strand at 442.742 kb on + strand at 442.743 kb on - strand at 442.743 kb on - strand at 442.743 kb on - strand at 442.841 kb on + strand at 442.842 kb on - strand at 442.853 kb on + strand at 442.853 kb on + strand at 442.951 kb on - strand at 443.175 kb on - strand at 443.351 kb on - strand at 443.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 441,218 + ABZR87_RS18180 0.20 -0.7 441,219 - ABZR87_RS18180 0.20 -2.2 441,382 - ABZR87_RS18180 0.49 -0.0 441,607 - ABZR87_RS18180 0.89 +0.1 441,666 + +0.2 441,667 - +0.5 441,667 - +0.7 441,774 + ABZR87_RS18185 0.22 -0.2 441,774 + ABZR87_RS18185 0.22 -0.8 441,849 + ABZR87_RS18185 0.36 +0.3 441,849 + ABZR87_RS18185 0.36 -0.1 441,849 + ABZR87_RS18185 0.36 +0.5 441,849 + ABZR87_RS18185 0.36 +1.5 441,849 + ABZR87_RS18185 0.36 -0.5 441,850 - ABZR87_RS18185 0.37 +0.4 441,850 - ABZR87_RS18185 0.37 +1.5 441,850 - ABZR87_RS18185 0.37 +0.1 441,850 - ABZR87_RS18185 0.37 -0.5 441,850 - ABZR87_RS18185 0.37 +0.2 441,850 - ABZR87_RS18185 0.37 -1.9 441,850 - ABZR87_RS18185 0.37 +0.9 441,850 - ABZR87_RS18185 0.37 +0.5 441,868 - ABZR87_RS18185 0.40 +0.1 441,915 + ABZR87_RS18185 0.49 -1.6 441,915 + ABZR87_RS18185 0.49 +0.3 441,970 - ABZR87_RS18185 0.60 -1.1 441,991 + ABZR87_RS18185 0.64 +0.1 441,991 + ABZR87_RS18185 0.64 -0.3 441,991 + ABZR87_RS18185 0.64 -1.2 441,992 - ABZR87_RS18185 0.64 +1.1 441,992 - ABZR87_RS18185 0.64 +0.6 442,057 - ABZR87_RS18185 0.77 -0.1 442,074 + ABZR87_RS18185 0.80 -3.2 442,454 + ABZR87_RS18190 0.58 -0.5 442,574 + ABZR87_RS18190 0.82 -1.6 442,644 - +0.2 442,644 - -0.2 442,663 - -1.0 442,717 - +0.4 442,742 + +1.0 442,743 - +2.1 442,743 - +0.0 442,743 - +0.4 442,841 + +0.5 442,842 - -1.2 442,853 + +0.3 442,853 + +0.4 442,951 - +0.2 443,175 - -0.6 443,351 - +0.5 443,360 - +0.3
Or see this region's nucleotide sequence