Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18025 and ABZR87_RS18030 overlap by 4 nucleotides ABZR87_RS18030 and ABZR87_RS18035 are separated by 14 nucleotides ABZR87_RS18035 and ABZR87_RS18040 are separated by 8 nucleotides
ABZR87_RS18025: ABZR87_RS18025 - flagellar biosynthesis protein FlhA, at 399,717 to 401,852
_RS18025
ABZR87_RS18030: ABZR87_RS18030 - flagellar biosynthesis protein FlhF, at 401,849 to 403,756
_RS18030
ABZR87_RS18035: ABZR87_RS18035 - flagellar synthesis regulator FleN, at 403,771 to 404,553
_RS18035
ABZR87_RS18040: ABZR87_RS18040 - RNA polymerase sigma factor FliA, at 404,562 to 405,323
_RS18040
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.199 kb on + strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.200 kb on - strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.253 kb on + strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.254 kb on - strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.261 kb on + strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.262 kb on - strand, within ABZR87_RS18025 at 401.414 kb on + strand, within ABZR87_RS18025 at 401.415 kb on - strand, within ABZR87_RS18025 at 401.615 kb on + strand, within ABZR87_RS18025 at 401.719 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.819 kb on + strand at 401.866 kb on + strand at 401.867 kb on - strand at 402.440 kb on - strand, within ABZR87_RS18030 at 402.884 kb on - strand, within ABZR87_RS18030 at 402.938 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.971 kb on + strand, within ABZR87_RS18030 at 402.972 kb on - strand, within ABZR87_RS18030 at 403.211 kb on + strand, within ABZR87_RS18030 at 403.211 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.556 kb on + strand, within ABZR87_RS18030 at 403.557 kb on - strand, within ABZR87_RS18030 at 403.565 kb on + strand, within ABZR87_RS18030 at 403.566 kb on - strand at 403.705 kb on - strand at 403.923 kb on + strand, within ABZR87_RS18035 at 404.233 kb on + strand, within ABZR87_RS18035 at 404.285 kb on + strand, within ABZR87_RS18035 at 404.286 kb on - strand, within ABZR87_RS18035 at 404.548 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.591 kb on + strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.592 kb on - strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.595 kb on + strand at 404.596 kb on + strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.596 kb on - strand at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.640 kb on + strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040 at 404.641 kb on - strand, within ABZR87_RS18040
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 401,199 + ABZR87_RS18025 0.69 +0.8 401,199 + ABZR87_RS18025 0.69 -0.5 401,199 + ABZR87_RS18025 0.69 -1.1 401,200 - ABZR87_RS18025 0.69 -1.4 401,200 - ABZR87_RS18025 0.69 -1.3 401,200 - ABZR87_RS18025 0.69 -1.8 401,253 + ABZR87_RS18025 0.72 -0.6 401,253 + ABZR87_RS18025 0.72 -0.7 401,254 - ABZR87_RS18025 0.72 -2.1 401,254 - ABZR87_RS18025 0.72 -0.5 401,261 + ABZR87_RS18025 0.72 -0.5 401,261 + ABZR87_RS18025 0.72 -0.2 401,261 + ABZR87_RS18025 0.72 -1.2 401,262 - ABZR87_RS18025 0.72 +0.8 401,262 - ABZR87_RS18025 0.72 +0.7 401,262 - ABZR87_RS18025 0.72 -2.2 401,414 + ABZR87_RS18025 0.79 +0.5 401,415 - ABZR87_RS18025 0.79 -0.3 401,615 + ABZR87_RS18025 0.89 -2.2 401,719 + -0.4 401,819 + -0.5 401,819 + -1.1 401,819 + -0.7 401,866 + -0.5 401,867 - -0.9 402,440 - ABZR87_RS18030 0.31 -1.3 402,884 - ABZR87_RS18030 0.54 -0.4 402,938 + ABZR87_RS18030 0.57 -1.3 402,971 + ABZR87_RS18030 0.59 -0.9 402,971 + ABZR87_RS18030 0.59 -0.9 402,971 + ABZR87_RS18030 0.59 -0.3 402,972 - ABZR87_RS18030 0.59 -1.3 403,211 + ABZR87_RS18030 0.71 +0.0 403,211 + ABZR87_RS18030 0.71 -0.7 403,556 + ABZR87_RS18030 0.89 -0.1 403,556 + ABZR87_RS18030 0.89 -0.6 403,556 + ABZR87_RS18030 0.89 -0.5 403,556 + ABZR87_RS18030 0.89 -0.5 403,557 - ABZR87_RS18030 0.90 -1.5 403,565 + ABZR87_RS18030 0.90 -0.4 403,566 - -0.7 403,705 - +0.9 403,923 + ABZR87_RS18035 0.19 +0.6 404,233 + ABZR87_RS18035 0.59 +1.0 404,285 + ABZR87_RS18035 0.66 +0.1 404,286 - ABZR87_RS18035 0.66 -0.2 404,548 + +0.8 404,591 + +0.1 404,591 + +0.1 404,591 + -1.5 404,591 + -0.2 404,591 + -0.1 404,591 + -1.6 404,592 - -0.9 404,592 - -0.1 404,592 - -1.5 404,592 - -1.2 404,592 - -1.8 404,592 - -0.7 404,592 - -0.7 404,592 - -0.5 404,592 - +0.0 404,592 - -1.8 404,592 - -0.5 404,592 - +0.7 404,595 + -0.9 404,595 + +0.1 404,595 + -0.8 404,595 + -0.2 404,595 + -0.1 404,595 + -1.8 404,595 + -0.8 404,596 + +0.7 404,596 - -0.3 404,596 - -0.4 404,596 - +0.2 404,596 - +1.1 404,596 - -0.5 404,596 - -1.1 404,596 - +0.5 404,596 - -0.5 404,596 - -0.3 404,596 - -1.3 404,596 - -0.1 404,640 + ABZR87_RS18040 0.10 -0.9 404,640 + ABZR87_RS18040 0.10 -0.6 404,640 + ABZR87_RS18040 0.10 -0.5 404,641 - ABZR87_RS18040 0.10 -0.6 404,641 - ABZR87_RS18040 0.10 -0.4 404,641 - ABZR87_RS18040 0.10 -0.5 404,641 - ABZR87_RS18040 0.10 -2.1 404,641 - ABZR87_RS18040 0.10 -0.5
Or see this region's nucleotide sequence