Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17950

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17945 and ABZR87_RS17950 are separated by 79 nucleotidesABZR87_RS17950 and ABZR87_RS17955 are separated by 25 nucleotidesABZR87_RS17955 and ABZR87_RS17960 are separated by 18 nucleotides ABZR87_RS17945: ABZR87_RS17945 - flagellar motor stator protein MotA, at 380,482 to 381,342 _RS17945 ABZR87_RS17950: ABZR87_RS17950 - flagellar motor protein MotB, at 381,422 to 382,369 _RS17950 ABZR87_RS17955: ABZR87_RS17955 - response regulator, at 382,395 to 382,808 _RS17955 ABZR87_RS17960: ABZR87_RS17960 - chemotaxis protein CheA, at 382,827 to 385,001 _RS17960 Position (kb) 381 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 380.433 kb on + strandat 380.445 kb on + strandat 380.445 kb on + strandat 380.445 kb on + strandat 380.446 kb on - strandat 380.446 kb on - strandat 380.446 kb on - strandat 380.486 kb on + strandat 380.486 kb on + strandat 380.487 kb on - strandat 380.500 kb on + strandat 380.501 kb on - strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.533 kb on + strandat 380.534 kb on - strandat 380.534 kb on - strandat 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.704 kb on + strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.705 kb on - strand, within ABZR87_RS17945at 380.706 kb on + strand, within ABZR87_RS17945at 380.706 kb on + strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.707 kb on - strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.728 kb on + strand, within ABZR87_RS17945at 380.729 kb on - strand, within ABZR87_RS17945at 380.729 kb on - strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.818 kb on + strand, within ABZR87_RS17945at 380.819 kb on - strand, within ABZR87_RS17945at 380.819 kb on - strand, within ABZR87_RS17945at 380.867 kb on - strand, within ABZR87_RS17945at 381.105 kb on + strand, within ABZR87_RS17945at 381.235 kb on + strand, within ABZR87_RS17945at 381.355 kb on + strandat 381.355 kb on + strandat 381.356 kb on - strandat 381.356 kb on - strandat 381.390 kb on - strandat 381.513 kb on - strandat 381.605 kb on + strand, within ABZR87_RS17950at 381.606 kb on - strand, within ABZR87_RS17950at 381.606 kb on - strand, within ABZR87_RS17950at 381.606 kb on - strand, within ABZR87_RS17950at 381.947 kb on + strand, within ABZR87_RS17950at 381.947 kb on + strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.948 kb on - strand, within ABZR87_RS17950at 381.949 kb on + strand, within ABZR87_RS17950at 382.037 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.190 kb on + strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.191 kb on - strand, within ABZR87_RS17950at 382.367 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.826 kb on + strandat 382.827 kb on - strandat 383.140 kb on - strand, within ABZR87_RS17960at 383.157 kb on - strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.178 kb on + strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960at 383.179 kb on - strand, within ABZR87_RS17960

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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380,433 + -0.1
380,445 + -0.5
380,445 + +0.9
380,445 + -0.5
380,446 - +0.9
380,446 - +0.1
380,446 - -0.5
380,486 + -1.0
380,486 + -0.1
380,487 - -0.6
380,500 + -0.7
380,501 - -0.4
380,533 + +0.4
380,533 + -0.7
380,533 + -0.5
380,533 + -0.1
380,533 + +0.6
380,533 + -0.4
380,534 - +0.1
380,534 - -1.4
380,704 + ABZR87_RS17945 0.26 -0.8
380,704 + ABZR87_RS17945 0.26 -0.1
380,704 + ABZR87_RS17945 0.26 -0.3
380,704 + ABZR87_RS17945 0.26 -0.5
380,704 + ABZR87_RS17945 0.26 +0.9
380,704 + ABZR87_RS17945 0.26 -0.5
380,705 - ABZR87_RS17945 0.26 -1.0
380,705 - ABZR87_RS17945 0.26 -0.4
380,705 - ABZR87_RS17945 0.26 -0.6
380,705 - ABZR87_RS17945 0.26 +0.9
380,705 - ABZR87_RS17945 0.26 -0.8
380,705 - ABZR87_RS17945 0.26 +1.3
380,705 - ABZR87_RS17945 0.26 -1.3
380,706 + ABZR87_RS17945 0.26 -0.4
380,706 + ABZR87_RS17945 0.26 +0.0
380,707 - ABZR87_RS17945 0.26 -0.2
380,707 - ABZR87_RS17945 0.26 -1.1
380,707 - ABZR87_RS17945 0.26 +1.0
380,707 - ABZR87_RS17945 0.26 -0.6
380,728 + ABZR87_RS17945 0.29 -0.6
380,728 + ABZR87_RS17945 0.29 -0.3
380,728 + ABZR87_RS17945 0.29 +0.5
380,728 + ABZR87_RS17945 0.29 -1.1
380,728 + ABZR87_RS17945 0.29 +0.0
380,729 - ABZR87_RS17945 0.29 +0.6
380,729 - ABZR87_RS17945 0.29 -0.9
380,818 + ABZR87_RS17945 0.39 -0.2
380,818 + ABZR87_RS17945 0.39 -0.4
380,818 + ABZR87_RS17945 0.39 -0.1
380,818 + ABZR87_RS17945 0.39 +0.8
380,819 - ABZR87_RS17945 0.39 -0.6
380,819 - ABZR87_RS17945 0.39 -0.1
380,867 - ABZR87_RS17945 0.45 -1.3
381,105 + ABZR87_RS17945 0.72 +0.6
381,235 + ABZR87_RS17945 0.87 +0.3
381,355 + +0.3
381,355 + -0.6
381,356 - -0.1
381,356 - -0.5
381,390 - +1.5
381,513 - -1.6
381,605 + ABZR87_RS17950 0.19 +1.1
381,606 - ABZR87_RS17950 0.19 -0.4
381,606 - ABZR87_RS17950 0.19 -1.4
381,606 - ABZR87_RS17950 0.19 -3.0
381,947 + ABZR87_RS17950 0.55 +0.3
381,947 + ABZR87_RS17950 0.55 -0.1
381,948 - ABZR87_RS17950 0.55 +0.7
381,948 - ABZR87_RS17950 0.55 -1.4
381,948 - ABZR87_RS17950 0.55 -0.7
381,948 - ABZR87_RS17950 0.55 -0.2
381,948 - ABZR87_RS17950 0.55 -0.6
381,948 - ABZR87_RS17950 0.55 +0.3
381,949 + ABZR87_RS17950 0.56 -0.1
382,037 + ABZR87_RS17950 0.65 +0.1
382,190 + ABZR87_RS17950 0.81 +0.5
382,190 + ABZR87_RS17950 0.81 -0.2
382,190 + ABZR87_RS17950 0.81 +1.2
382,190 + ABZR87_RS17950 0.81 -0.6
382,190 + ABZR87_RS17950 0.81 +1.1
382,191 - ABZR87_RS17950 0.81 -1.1
382,191 - ABZR87_RS17950 0.81 -0.2
382,191 - ABZR87_RS17950 0.81 -0.1
382,367 + +0.3
382,826 + -0.1
382,826 + +1.1
382,826 + +0.0
382,826 + +0.9
382,826 + -1.4
382,826 + +0.2
382,826 + +0.8
382,827 - -2.2
383,140 - ABZR87_RS17960 0.14 -0.4
383,157 - ABZR87_RS17960 0.15 -0.3
383,178 + ABZR87_RS17960 0.16 +2.9
383,178 + ABZR87_RS17960 0.16 +0.3
383,178 + ABZR87_RS17960 0.16 +1.0
383,178 + ABZR87_RS17960 0.16 +0.5
383,179 - ABZR87_RS17960 0.16 +0.2
383,179 - ABZR87_RS17960 0.16 -0.1
383,179 - ABZR87_RS17960 0.16 +0.5

Or see this region's nucleotide sequence