Experiment: Ra3_0.01
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17915 and ABZR87_RS17920 are separated by 2 nucleotides ABZR87_RS17920 and ABZR87_RS17925 overlap by 4 nucleotides
ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365
_RS17915
ABZR87_RS17920: ABZR87_RS17920 - citryl-CoA lyase, at 376,368 to 377,222
_RS17920
ABZR87_RS17925: ABZR87_RS17925 - SMP-30/gluconolactonase/LRE family protein, at 377,219 to 378,115
_RS17925
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 375.475 kb on + strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.753 kb on + strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.830 kb on - strand, within ABZR87_RS17915 at 376.290 kb on + strand at 376.426 kb on - strand at 376.459 kb on + strand, within ABZR87_RS17920 at 376.460 kb on - strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.023 kb on - strand, within ABZR87_RS17920 at 377.160 kb on + strand at 377.167 kb on - strand at 377.167 kb on - strand at 377.169 kb on - strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.453 kb on + strand, within ABZR87_RS17925 at 377.453 kb on + strand, within ABZR87_RS17925 at 377.514 kb on - strand, within ABZR87_RS17925 at 377.514 kb on - strand, within ABZR87_RS17925 at 377.569 kb on + strand, within ABZR87_RS17925 at 377.570 kb on - strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.688 kb on - strand, within ABZR87_RS17925 at 377.870 kb on + strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.078 kb on + strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.154 kb on - strand at 378.154 kb on - strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.01 remove 375,475 + ABZR87_RS17915 0.25 -1.1 375,476 - ABZR87_RS17915 0.25 -0.1 375,476 - ABZR87_RS17915 0.25 +1.2 375,512 - ABZR87_RS17915 0.28 -0.2 375,512 - ABZR87_RS17915 0.28 -0.6 375,602 - ABZR87_RS17915 0.36 +0.2 375,602 - ABZR87_RS17915 0.36 -0.1 375,602 - ABZR87_RS17915 0.36 -0.4 375,602 - ABZR87_RS17915 0.36 -1.0 375,753 + ABZR87_RS17915 0.48 +0.1 375,754 - ABZR87_RS17915 0.48 +0.2 375,754 - ABZR87_RS17915 0.48 +1.3 375,829 + ABZR87_RS17915 0.55 -0.5 375,829 + ABZR87_RS17915 0.55 -0.3 375,830 - ABZR87_RS17915 0.55 -0.2 376,290 + +1.5 376,426 - -0.5 376,459 + ABZR87_RS17920 0.11 +2.9 376,460 - ABZR87_RS17920 0.11 +0.1 376,824 + ABZR87_RS17920 0.53 -0.4 376,824 + ABZR87_RS17920 0.53 -0.1 376,824 + ABZR87_RS17920 0.53 -0.2 376,824 + ABZR87_RS17920 0.53 -0.1 376,825 - ABZR87_RS17920 0.53 +0.1 376,825 - ABZR87_RS17920 0.53 -0.2 376,929 + ABZR87_RS17920 0.66 -0.4 376,929 + ABZR87_RS17920 0.66 +0.4 376,929 + ABZR87_RS17920 0.66 -0.4 377,022 + ABZR87_RS17920 0.76 -0.5 377,022 + ABZR87_RS17920 0.76 -2.5 377,023 - ABZR87_RS17920 0.77 +0.1 377,160 + +0.1 377,167 - +0.3 377,167 - +0.4 377,169 - -0.4 377,225 + +0.3 377,225 + +0.4 377,225 + +0.2 377,225 + +0.1 377,225 + +0.3 377,225 + -0.5 377,225 + -2.1 377,226 - +0.1 377,226 - -0.3 377,226 - +0.7 377,226 - -0.3 377,226 - -1.2 377,453 + ABZR87_RS17925 0.26 +0.1 377,453 + ABZR87_RS17925 0.26 +0.1 377,514 - ABZR87_RS17925 0.33 -1.2 377,514 - ABZR87_RS17925 0.33 +0.9 377,569 + ABZR87_RS17925 0.39 -0.5 377,570 - ABZR87_RS17925 0.39 -0.3 377,636 + ABZR87_RS17925 0.46 -0.0 377,636 + ABZR87_RS17925 0.46 +0.7 377,636 + ABZR87_RS17925 0.46 +0.2 377,637 - ABZR87_RS17925 0.47 +0.2 377,637 - ABZR87_RS17925 0.47 -0.1 377,637 - ABZR87_RS17925 0.47 +0.5 377,637 - ABZR87_RS17925 0.47 +1.2 377,637 - ABZR87_RS17925 0.47 -0.7 377,637 - ABZR87_RS17925 0.47 -0.1 377,637 - ABZR87_RS17925 0.47 -0.2 377,688 - ABZR87_RS17925 0.52 +0.3 377,870 + ABZR87_RS17925 0.73 -0.2 377,871 - ABZR87_RS17925 0.73 +0.2 377,871 - ABZR87_RS17925 0.73 -0.1 377,871 - ABZR87_RS17925 0.73 -0.2 378,013 + ABZR87_RS17925 0.89 -0.4 378,013 + ABZR87_RS17925 0.89 -0.8 378,078 + +0.6 378,079 - -0.2 378,079 - -1.6 378,079 - -1.1 378,154 - -0.3 378,154 - +0.1 378,164 + -0.6 378,164 + +1.5 378,164 + -0.5 378,164 + +1.1 378,164 + -1.2
Or see this region's nucleotide sequence