Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17775

Experiment: Ra3_0.01

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17770 and ABZR87_RS17775 are separated by 22 nucleotidesABZR87_RS17775 and ABZR87_RS17780 are separated by 162 nucleotides ABZR87_RS17770: ABZR87_RS17770 - LLM class flavin-dependent oxidoreductase, at 347,322 to 348,668 _RS17770 ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908 _RS17775 ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955 _RS17780 Position (kb) 348 349 350Strain fitness (log2 ratio) -2 -1 0 1at 347.775 kb on + strand, within ABZR87_RS17770at 348.069 kb on + strand, within ABZR87_RS17770at 348.069 kb on + strand, within ABZR87_RS17770at 348.070 kb on - strand, within ABZR87_RS17770at 348.219 kb on + strand, within ABZR87_RS17770at 348.380 kb on - strand, within ABZR87_RS17770at 348.591 kb on + strandat 348.591 kb on + strandat 348.690 kb on + strandat 348.690 kb on + strandat 348.691 kb on - strandat 348.696 kb on + strandat 348.696 kb on + strandat 348.970 kb on + strand, within ABZR87_RS17775at 348.970 kb on + strand, within ABZR87_RS17775at 348.970 kb on + strand, within ABZR87_RS17775at 348.970 kb on + strand, within ABZR87_RS17775at 348.970 kb on + strand, within ABZR87_RS17775at 349.153 kb on + strand, within ABZR87_RS17775at 349.154 kb on - strand, within ABZR87_RS17775at 349.156 kb on + strand, within ABZR87_RS17775at 349.156 kb on + strand, within ABZR87_RS17775at 349.157 kb on - strand, within ABZR87_RS17775at 349.183 kb on + strand, within ABZR87_RS17775at 349.465 kb on + strand, within ABZR87_RS17775at 349.465 kb on + strand, within ABZR87_RS17775at 349.465 kb on + strand, within ABZR87_RS17775at 349.466 kb on - strand, within ABZR87_RS17775at 349.466 kb on - strand, within ABZR87_RS17775at 349.858 kb on + strandat 349.858 kb on + strandat 350.031 kb on + strandat 350.031 kb on + strandat 350.031 kb on + strandat 350.032 kb on - strandat 350.293 kb on + strand, within ABZR87_RS17780at 350.294 kb on - strand, within ABZR87_RS17780at 350.294 kb on - strand, within ABZR87_RS17780at 350.554 kb on + strand, within ABZR87_RS17780at 350.555 kb on - strand, within ABZR87_RS17780at 350.555 kb on - strand, within ABZR87_RS17780at 350.590 kb on + strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780at 350.591 kb on - strand, within ABZR87_RS17780

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.01
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347,775 + ABZR87_RS17770 0.34 +0.1
348,069 + ABZR87_RS17770 0.55 +0.5
348,069 + ABZR87_RS17770 0.55 -0.5
348,070 - ABZR87_RS17770 0.56 +0.5
348,219 + ABZR87_RS17770 0.67 +0.1
348,380 - ABZR87_RS17770 0.79 -0.6
348,591 + -0.5
348,591 + +0.6
348,690 + +0.4
348,690 + +0.5
348,691 - -0.4
348,696 + +0.3
348,696 + +0.4
348,970 + ABZR87_RS17775 0.23 +0.2
348,970 + ABZR87_RS17775 0.23 +0.1
348,970 + ABZR87_RS17775 0.23 +1.0
348,970 + ABZR87_RS17775 0.23 -0.8
348,970 + ABZR87_RS17775 0.23 +0.2
349,153 + ABZR87_RS17775 0.38 +0.6
349,154 - ABZR87_RS17775 0.38 +0.5
349,156 + ABZR87_RS17775 0.38 -0.7
349,156 + ABZR87_RS17775 0.38 +1.5
349,157 - ABZR87_RS17775 0.38 +0.9
349,183 + ABZR87_RS17775 0.40 +0.2
349,465 + ABZR87_RS17775 0.64 +0.7
349,465 + ABZR87_RS17775 0.64 +1.1
349,465 + ABZR87_RS17775 0.64 -0.0
349,466 - ABZR87_RS17775 0.64 -0.4
349,466 - ABZR87_RS17775 0.64 +0.2
349,858 + -0.0
349,858 + -0.2
350,031 + +0.6
350,031 + +0.5
350,031 + -1.6
350,032 - +0.8
350,293 + ABZR87_RS17780 0.25 +0.2
350,294 - ABZR87_RS17780 0.25 -0.8
350,294 - ABZR87_RS17780 0.25 +0.6
350,554 + ABZR87_RS17780 0.55 -0.4
350,555 - ABZR87_RS17780 0.55 +0.5
350,555 - ABZR87_RS17780 0.55 -2.0
350,590 + ABZR87_RS17780 0.59 +0.2
350,591 - ABZR87_RS17780 0.59 -0.3
350,591 - ABZR87_RS17780 0.59 -0.8
350,591 - ABZR87_RS17780 0.59 -0.3

Or see this region's nucleotide sequence